CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G53470.1	CDX70995	AT5G22290.1	21798944
AT5G53470.1	CDX88803	AT5G22290.1	21798944
AT5G53470.1	CDX92368	AT5G22290.1	21798944
AT5G53470.1	CDY09128	AT5G22290.1	21798944
AT5G53470.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY49168	Canola	endoplasmic reticulum	93.51	92.69
AT5G53470.1	Thale cress	endoplasmic reticulum	87.02	87.28
CDX89227	Canola	endoplasmic reticulum	76.4	73.58
CDY19024	Canola	endoplasmic reticulum	71.68	71.68
CDY29860	Canola	endoplasmic reticulum	45.43	61.11
GSMUA_Achr4P05400_001	Banana	cytosol	48.97	60.14
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	61.95	59.83
KRH64393	Soybean	endoplasmic reticulum	60.77	59.54
Solyc03g082910.2.1	Tomato	nucleus	60.18	58.96
PGSC0003DMT400047661	Potato	endoplasmic reticulum	60.47	58.91
KRH53542	Soybean	endoplasmic reticulum	60.77	58.19
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	56.05	56.21
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	53.39	56.21
EES13117	Sorghum	endoplasmic reticulum	55.16	55.99
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	53.1	55.9
Zm00001d026639_P002	Maize	plasma membrane	53.98	55.79
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	52.51	55.62
Zm00001d001798_P002	Maize	plastid	53.39	55.18
CDX92839	Canola	endoplasmic reticulum	26.55	53.89
KXG37573	Sorghum	cytosol	20.65	49.65
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	31.56	45.34
CDX92624	Canola	endoplasmic reticulum, vacuole	17.4	16.34
CDY10995	Canola	endoplasmic reticulum, golgi	17.4	16.3
CDY03471	Canola	vacuole	17.11	15.63
CDY34268	Canola	endoplasmic reticulum, vacuole	17.4	15.49

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	MapMan:35.1	GO:A0A078JD86	UniProt:A0A078JD86	InterPro:Acyl-CoA-binding_protein
InterPro:Acyl-CoA-binding_sf	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY62840	ProteinID:CDY62840
ProteinID:CDY62840.1	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00037663001	InterPro:IPR000582	InterPro:IPR002110
InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770	PFAM:PF00887	PFAM:PF13857	PRINTS:PR00689
PRINTS:PR01415	PFscan:PS50088	PFscan:PS50297	PFscan:PS51228	PANTHER:PTHR24119	PANTHER:PTHR24119:SF0
SMART:SM00248	SUPFAM:SSF47027	SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI0004EEFFBF	SEG:seg

Description

BnaC02g44810DBnaC02g44810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JD86]

Coordinates

chrLK034204:+:22197..24342

Molecular Weight (calculated)

37206.0 Da

IEP (calculated)

4.353

GRAVY (calculated)

-0.471

Length

339 amino acids

Sequence
(BLAST)

001: MGGDWYHLAQ SLIFGLIFAY LLAKLISILV AFKDDNLSLT RSHDAQSEND YHRKVDSSTG ETDSLVAEQG SLRGDEDDDD DWEGVESTEL DEAFSAATAF
101: VAAAASDRLS QKVSNELQLQ LYGLYKIATE GACTAPQPSA LKMTARAKWQ AWHKLGAMPA EEAMEKYIDL VTHLYPAWVE GGSKGSNRSG DAAGSNSRAP
201: MGPVFSSLVY EEESENDLKI DAVHAFAREG EVENLLKCIE SGIPVNARDS EGRTPLHWAI DRGHLNVAKA LVDKNADVNA KDNEGQTALH YAVVCEREAL
301: AEFLVKQKAD TSIKDEDGNS PLDLCESEWS WMREKKDSD

Best Arabidopsis Sequence Match ( AT5G53470.1 )
(BLAST)

001: MADWYQLAQS IIFGLIFAYL LAKLISILLA FKDENLSLTR NHTTQSEYEN LRKVETLTGI SGETDSLIAE QGSLRGDEDE SDDDDWEGVE STELDEAFSA
101: ATAFVAAAAS DRLSQKVSNE LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP AWVEGGSKRR NRSGEAAGPM
201: GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA
301: EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN

Arabidopsis Description

ACBP1Acyl-CoA-binding domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SM23]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.