CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92834
EES11880
EES14354

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	EER92834	AT4G38580.1	18823312
AT4G27780.1	EES11880	AT4G38580.1	18823312
AT4G27780.1	EES14354	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	63.12	37.71
Zm00001d001798_P002	Maize	plastid	81.56	35.06
EES13117	Sorghum	endoplasmic reticulum	81.56	34.43
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	63.12	27.64
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	63.12	27.64
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	62.41	27.5
GSMUA_Achr4P05400_001	Banana	cytosol	46.1	23.55
AT5G53470.1	Thale cress	endoplasmic reticulum	50.35	21.01
CDY62840	Canola	endoplasmic reticulum	49.65	20.65
KRH64393	Soybean	endoplasmic reticulum	50.35	20.52
Solyc03g082910.2.1	Tomato	nucleus	49.65	20.23
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	50.35	20.23
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	48.23	20.12
CDY19024	Canola	endoplasmic reticulum	48.23	20.06
KRH53542	Soybean	endoplasmic reticulum	50.35	20.06
Bra022656.1-P	Field mustard	endoplasmic reticulum	48.23	19.94
CDY49168	Canola	endoplasmic reticulum	48.23	19.88
PGSC0003DMT400047661	Potato	endoplasmic reticulum	48.94	19.83
AT4G27780.1	Thale cress	endoplasmic reticulum	48.94	19.49
CDX89227	Canola	endoplasmic reticulum	48.23	19.32
Bra026307.1-P	Field mustard	endoplasmic reticulum	47.52	18.41
CDX92839	Canola	endoplasmic reticulum	17.02	14.37
Bra019027.1-P	Field mustard	endoplasmic reticulum	22.7	12.7
CDY29860	Canola	endoplasmic reticulum	22.7	12.7
EER95185	Sorghum	endoplasmic reticulum	12.06	3.06

Protein Annotations

Gene3D:1.25.40.20	MapMan:35.1	UniProt:A0A1B6QI24	InterPro:Acyl-CoA-binding_protein	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom
InterPro:Ankyrin_rpt-contain_sf	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000582
InterPro:IPR002110	InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KXG37573	ProteinID:KXG37573	ProteinID:KXG37573.1
PFAM:PF13857	PFscan:PS50088	PFscan:PS50297	PFscan:PS51228	PANTHER:PTHR24119	PANTHER:PTHR24119:SF0
SMART:SM00248	EnsemblPlantsGene:SORBI_3001G092800	SUPFAM:SSF48403	UniParc:UPI00081AEADB	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:7158098..7160184

Molecular Weight (calculated)

15287.5 Da

IEP (calculated)

4.052

GRAVY (calculated)

-0.608

Length

141 amino acids

Sequence
(BLAST)

001: MPREEAMQEY ITIVQELFPN WDAGASAKGK DEDSIASARG PRDLSLMYEE EEGNDSELGD IHVSARERAN DDIVKPLSDG VEVNARDTEG RSPLHWAVDC
101: GHLSAVEALA KANADLNAKD NEGQTTLPCA AVCEREDIAS C

Best Arabidopsis Sequence Match ( AT5G53470.1 )
(BLAST)

001: MADWYQLAQS IIFGLIFAYL LAKLISILLA FKDENLSLTR NHTTQSEYEN LRKVETLTGI SGETDSLIAE QGSLRGDEDE SDDDDWEGVE STELDEAFSA
101: ATAFVAAAAS DRLSQKVSNE LQLQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIDLVTQLYP AWVEGGSKRR NRSGEAAGPM
201: GPVFSSLVYE EESDNELKID AIHAFAREGE VENLLKCIEN GIPVNARDSE GRTPLHWAID RGHLNVAEAL VDKNADVNAK DNEGQTSLHY AVVCEREALA
301: EFLVKQKADT TIKDEDGNSP LDLCESEWSW MREKKDSN

Arabidopsis Description

ACBP1Acyl-CoA-binding domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SM23]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.