CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
peroxisome 1
extracellular 4
endoplasmic reticulum 6
vacuole 5
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH12100
KRH22653
KRH26664
KRH37061
KRH44613
KRH47291

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	KRH12100	AT3G16770.1	15159625
AT4G27780.1	KRH37061	AT3G16770.1	15159625
AT4G27780.1	KRH44613	AT3G21150.1	21798944
AT4G27780.1	KRH47291	AT3G21150.1	21798944
AT5G53470.1	KRH22653	AT5G22290.1	21798944
AT5G53470.1	KRH26664	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53542	Soybean	endoplasmic reticulum	89.02	87.01
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	66.76	65.81
AT5G53470.1	Thale cress	endoplasmic reticulum	61.27	62.72
GSMUA_Achr4P05400_001	Banana	cytosol	49.71	62.32
Solyc03g082910.2.1	Tomato	nucleus	61.56	61.56
CDY62840	Canola	endoplasmic reticulum	59.54	60.77
PGSC0003DMT400047661	Potato	endoplasmic reticulum	60.98	60.63
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	58.96	60.35
CDY19024	Canola	endoplasmic reticulum	58.96	60.18
Bra022656.1-P	Field mustard	endoplasmic reticulum	58.96	59.82
AT4G27780.1	Thale cress	endoplasmic reticulum	60.69	59.32
CDX89227	Canola	endoplasmic reticulum	59.83	58.81
CDY49168	Canola	endoplasmic reticulum	57.8	58.48
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	52.31	56.21
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	52.02	55.9
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	51.16	55.31
Bra026307.1-P	Field mustard	endoplasmic reticulum	57.8	54.95
Zm00001d026639_P002	Maize	plasma membrane	50.87	53.66
Zm00001d001798_P002	Maize	plastid	50.58	53.35
EES13117	Sorghum	endoplasmic reticulum	50.87	52.69
Bra019027.1-P	Field mustard	endoplasmic reticulum	37.86	51.98
CDY29860	Canola	endoplasmic reticulum	37.57	51.59
KXG37573	Sorghum	cytosol	20.52	50.35
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	32.37	47.46
CDX92839	Canola	endoplasmic reticulum	22.83	47.31
KRH77091	Soybean	endoplasmic reticulum, vacuole	15.9	18.71
KRH28391	Soybean	endoplasmic reticulum	15.9	18.64
KRH15433	Soybean	endoplasmic reticulum, vacuole	21.1	18.39
KRH05608	Soybean	endoplasmic reticulum, vacuole	19.36	16.42

Protein Annotations

Gene3D:1.20.80.10	Gene3D:1.25.40.20	EntrezGene:100802051	MapMan:35.1	EMBL:ACUP02002765	InterPro:Acyl-CoA-binding_protein
InterPro:Acyl-CoA-binding_sf	InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	InterPro:FERM/acyl-CoA-bd_prot_sf	EnsemblPlantsGene:GLYMA_04G233600
GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	UniProt:I1JYP3	InterPro:IPR000582
InterPro:IPR002110	InterPro:IPR014352	InterPro:IPR020683	InterPro:IPR036770	EnsemblPlants:KRH64393	ProteinID:KRH64393
ProteinID:KRH64393.1	PFAM:PF00887	PFAM:PF12796	PRINTS:PR00689	PRINTS:PR01415	PFscan:PS50088
PFscan:PS50297	PFscan:PS51228	PANTHER:PTHR24119	PANTHER:PTHR24119:SF0	SMART:SM00248	SUPFAM:SSF47027
SUPFAM:SSF48403	TMHMM:TMhelix	UniParc:UPI0002339DC0	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:+:50235717..50241022

Molecular Weight (calculated)

37886.7 Da

IEP (calculated)

4.215

GRAVY (calculated)

-0.476

Length

346 amino acids

Sequence
(BLAST)

001: MAEWQSLLQS IFVGLIFSYL LAKLISIVVS FKDDNLTVTR AAAAETTTTT RDDAVSSDAR PFEEESMVAE HGSVRNDSDG DYDDDDWEGV ESTELDEAFS
101: AATAFVDAAA ADRLSQKVSS DVQLQLYGLY KIATEGPCST PQPSPLKMTA RAKWQAWQKL GAMPPEDAMQ KYIDIVTETY PTWLDGSSLR NKSGDSGGHG
201: SEAKGPMGPV FSTFVYEEEY GSDSQMEAIH GFAREGDMAN LLKCIENGVS MNLKDSEGRT PLHWAVDRGH LNVTELLVGK NADVNAKDND GQTPLHYAVT
301: CEREAIAEYL LKHNADIYSK DNDGSSPRDI CESNWPCMQH VGGEVN

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.