Factsheet for Bra019027.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
peroxisome 1
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001640.1-P
Bra001815.1-P
Bra010738.1-P
Bra021200.1-P
Bra022176.1-P
Bra031255.1-P
Bra033570.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27780.1	Bra001640.1-P	AT3G16770.1	15159625
AT4G27780.1	Bra021200.1-P	AT3G16770.1	15159625
AT4G27780.1	Bra022176.1-P	AT3G16770.1	15159625
AT4G27780.1	Bra001815.1-P	AT3G21150.1	21798944
AT4G27780.1	Bra031255.1-P	AT3G21150.1	21798944
AT4G27780.1	Bra010738.1-P	AT4G38580.1	18823312
AT4G27780.1	Bra033570.1-P	AT4G38580.1	18823312

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29860	Canola	endoplasmic reticulum	90.48	90.48
AT4G27780.1	Thale cress	endoplasmic reticulum	69.05	49.15
Bra026307.1-P	Field mustard	endoplasmic reticulum	66.67	46.15
Bra022656.1-P	Field mustard	endoplasmic reticulum	58.73	43.4
VIT_16s0098g01570.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	56.75	40.74
GSMUA_Achr4P05400_001	Banana	cytosol	43.65	39.86
GSMUA_Achr4P04370_001	Banana	golgi, plasma membrane	50.79	37.87
KRH64393	Soybean	endoplasmic reticulum	51.98	37.86
Solyc03g082910.2.1	Tomato	nucleus	51.98	37.86
KRH53542	Soybean	endoplasmic reticulum	52.78	37.57
PGSC0003DMT400047661	Potato	endoplasmic reticulum	51.59	37.36
TraesCS2D01G600500.1	Wheat	endoplasmic reticulum	46.83	36.65
TraesCS2A01G586100.1	Wheat	endoplasmic reticulum	46.43	36.34
TraesCS2B01G596900.1	Wheat	endoplasmic reticulum	44.44	35.0
Zm00001d001798_P002	Maize	plastid	44.84	34.45
Zm00001d026639_P002	Maize	plasma membrane	44.05	33.84
EES13117	Sorghum	endoplasmic reticulum	44.84	33.83
HORVU0Hr1G005790.3	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	23.81	25.42
KXG37573	Sorghum	cytosol	12.7	22.7
Bra019240.1-P	Field mustard	endoplasmic reticulum, golgi	20.24	14.09
Bra013778.1-P	Field mustard	endoplasmic reticulum, vacuole	18.65	12.5

Protein Annotations

Gene3D:1.20.80.10	MapMan:35.1	InterPro:Acyl-CoA-binding_protein	InterPro:Acyl-CoA-binding_sf	EnsemblPlantsGene:Bra019027	EnsemblPlants:Bra019027.1
EnsemblPlants:Bra019027.1-P	InterPro:FERM/acyl-CoA-bd_prot_sf	GO:GO:0000062	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR000582	InterPro:IPR014352	UniProt:M4DR84	PFAM:PF00887
PRINTS:PR00689	PFscan:PS51228	PANTHER:PTHR23310	PANTHER:PTHR23310:SF96	SUPFAM:SSF47027	TMHMM:TMhelix
UniParc:UPI0002540B40	:	:	:	:	:

Description

AT4G27780 (E=4e-093) ACBP2 | ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2); acyl-CoA binding / lead ion binding

Coordinates

chrA03:+:26665243..26666563

Molecular Weight (calculated)

27307.8 Da

IEP (calculated)

4.323

GRAVY (calculated)

-0.358

Length

252 amino acids

Sequence
(BLAST)

001: MGDLAQLAQS VILGLIVSYL LAKLISIVVT FKEDNLFLAR HSEPESEVDS GRVEFSTVGG EAEQGSSRGE DDDWEGVEST ELDEAFSTAT LFVTTAAADR
101: LSRKVPGDVQ KQLYGLYKIA TEGPCTAPQP SALKLTARAK WQAWRKLGAM PTEEAMEKYI EIVTQLYPTW LHGGLKAGSR NDAGSSSGGT MGTVFSSLVY
201: EEESQNELKT DAIDAFAREG EVDREAIAEF LVKQKANTAS KDDEGNSTPR SL

Best Arabidopsis Sequence Match ( AT4G27780.1 )
(BLAST)

001: MGDWAQLAQS VILGLIFSYL LAKLISIVVT FKEDNLSLTR HPEESQLEIK PEGVDSRRLD SSCGGFGGEA DSLVAEQGSS RSDSVAGDDS EEDDDWEGVE
101: STELDEAFSA ATLFVTTAAA DRLSQKVPSD VQQQLYGLYK IATEGPCTAP QPSALKMTAR AKWQAWQKLG AMPPEEAMEK YIEIVTQLYP TWLDGGVKAG
201: SRGGDDAASN SRGTMGPVFS SLVYDEESEN ELKIDAIHGF AREGEVENLL KSIESGIPVN ARDSEGRTPL HWAIDRGHLN IAKVLVDKNA DVNAKDNEGQ
301: TPLHYAVVCD REAIAEFLVK QNANTAAKDE DGNSPLDLCE SDWPWIRDSA KQAD

Arabidopsis Description

ACBP2AtACBP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V3N7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.