Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000267.1-P | |
| Bra004709.1-P | |
| Bra019027.1-P | |
| Bra026307.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16770.1 | Bra000267.1-P | AT2G42580.1 | 19000166 |
| AT3G16770.1 | Bra004709.1-P | AT2G42580.1 | 19000166 |
| AT3G16770.1 | Bra019027.1-P | AT4G27780.1 | 15159625 |
| AT3G16770.1 | Bra026307.1-P | AT4G27780.1 | 15159625 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34977 | Canola | nucleus | 98.77 | 99.59 |
| CDY28337 | Canola | nucleus | 97.53 | 97.53 |
| AT3G16770.1 | Thale cress | nucleus | 82.72 | 81.05 |
| Bra001640.1-P | Field mustard | nucleus | 80.25 | 79.59 |
| Bra022176.1-P | Field mustard | nucleus | 76.54 | 76.86 |
| KRH12100 | Soybean | nucleus | 44.44 | 48.43 |
| KRH37061 | Soybean | nucleus | 44.86 | 45.99 |
| VIT_05s0077g01860.t01 | Wine grape | nucleus | 46.09 | 43.24 |
| Solyc01g065980.2.1 | Tomato | nucleus | 42.39 | 40.55 |
| PGSC0003DMT400043311 | Potato | nucleus | 41.56 | 38.26 |
| Bra021401.1-P | Field mustard | nucleus | 29.22 | 33.33 |
| Bra034624.1-P | Field mustard | nucleus | 20.99 | 30.18 |
| Bra003883.1-P | Field mustard | nucleus | 28.4 | 28.4 |
| Bra016063.1-P | Field mustard | nucleus | 27.98 | 27.09 |
| Bra008835.1-P | Field mustard | nucleus | 22.22 | 24.88 |
| Bra021871.1-P | Field mustard | nucleus | 21.4 | 24.07 |
| Bra005480.1-P | Field mustard | nucleus | 21.4 | 24.07 |
| Bra001541.1-P | Field mustard | nucleus | 34.16 | 23.58 |
| Bra021543.1-P | Field mustard | nucleus | 34.57 | 23.01 |
| Bra030919.1-P | Field mustard | nucleus | 28.81 | 22.88 |
| Bra027355.1-P | Field mustard | nucleus | 34.57 | 22.16 |
| Bra019622.1-P | Field mustard | nucleus | 20.58 | 22.03 |
| Bra006195.1-P | Field mustard | nucleus | 23.05 | 21.71 |
| Bra023404.1-P | Field mustard | nucleus | 22.22 | 21.69 |
| Bra028703.1-P | Field mustard | nucleus | 22.63 | 21.57 |
| Bra011529.1-P | Field mustard | nucleus | 23.05 | 21.37 |
| Bra017656.1-P | Field mustard | nucleus | 23.46 | 21.11 |
| Bra009272.1-P | Field mustard | nucleus | 21.81 | 20.95 |
| Bra005932.1-P | Field mustard | nucleus | 20.99 | 20.0 |
| Bra029302.1-P | Field mustard | nucleus | 20.16 | 19.29 |
| Bra031903.1-P | Field mustard | nucleus | 26.34 | 16.89 |
| Bra037794.1-P | Field mustard | nucleus | 25.51 | 16.27 |
| Bra024325.1-P | Field mustard | nucleus | 26.34 | 16.2 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlantsGene:Bra021200 | EnsemblPlants:Bra021200.1 |
| EnsemblPlants:Bra021200.1-P | ncoils:Coil | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M4DXF4 | PFAM:PF00847 | PRINTS:PR00367 |
| PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00025439E0 |
| SEG:seg | : | : | : | : | : |
Description
AT3G16770 (E=3e-089) RAP2.3, ATEBP, ERF72 | ATEBP (ETHYLENE-RESPONSIVE ELEMENT BINDING PROTEIN); DNA binding / protein binding / transcription activator/ transcription factor
Coordinates
chrA01:-:23407764..23408729
Molecular Weight (calculated)
27204.8 Da
IEP (calculated)
5.474
GRAVY (calculated)
-0.713
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIISDF APNVTKAKGR KLTAEELWSE LDASAADDFW GFHSTSKTQS TNQQVTLKEE AAEKEKEKEP VTEKRRKRKN VYRGIRKRPW GKWASEIRDP
101: RKGARVWLGT FNTAEEAAMA YDVAAKRIRG DKAKLNFPDL LHHPPRSPAT PLASSPVSEV QPPAKKHCVV SQSELTQPSF PVECSGFGSG DEFQLDYDLK
201: QQISSLESFL ELDGDTVEQP SRLDESVSEV DMWMIDDVIA SYQ
101: RKGARVWLGT FNTAEEAAMA YDVAAKRIRG DKAKLNFPDL LHHPPRSPAT PLASSPVSEV QPPAKKHCVV SQSELTQPSF PVECSGFGSG DEFQLDYDLK
201: QQISSLESFL ELDGDTVEQP SRLDESVSEV DMWMIDDVIA SYQ
001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
Arabidopsis Description
RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.