Factsheet for Bra009272.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98982	Canola	nucleus	98.42	98.42
CDX70027	Canola	nucleus	98.02	98.02
Bra005932.1-P	Field mustard	nucleus	87.35	86.67
Bra028703.1-P	Field mustard	nucleus	81.82	81.18
Bra019622.1-P	Field mustard	nucleus	62.85	70.04
Bra029302.1-P	Field mustard	nucleus	62.85	62.6
Solyc03g118190.2.1	Tomato	nucleus	41.9	43.44
KRH63877	Soybean	nucleus	31.62	39.8
KRH54084	Soybean	nucleus	41.9	39.41
KRH63879	Soybean	nucleus	40.71	39.31
PGSC0003DMT400036934	Potato	nucleus	42.69	39.13
VIT_17s0000g00200.t01	Wine grape	nucleus	36.76	37.8
Bra008835.1-P	Field mustard	nucleus	31.62	36.87
Bra023404.1-P	Field mustard	nucleus	35.97	36.55
Bra006195.1-P	Field mustard	nucleus	35.97	35.27
Bra005480.1-P	Field mustard	nucleus	28.46	33.33
Bra021871.1-P	Field mustard	nucleus	28.06	32.87
GSMUA_Achr11P...	Banana	nucleus	33.2	32.81
Bra034624.1-P	Field mustard	nucleus	19.37	28.99
Bra021401.1-P	Field mustard	nucleus	20.16	23.94
Bra011529.1-P	Field mustard	nucleus	22.92	22.14
Bra021200.1-P	Field mustard	nucleus	20.95	21.81
Bra022176.1-P	Field mustard	nucleus	20.55	21.49
Bra001640.1-P	Field mustard	nucleus	20.16	20.82
Bra017656.1-P	Field mustard	nucleus	22.13	20.74
Bra037794.1-P	Field mustard	nucleus	30.83	20.47
Bra031903.1-P	Field mustard	nucleus	30.43	20.32
Bra024325.1-P	Field mustard	nucleus	31.62	20.25
Bra003883.1-P	Field mustard	nucleus	18.97	19.75
Bra016063.1-P	Field mustard	nucleus	19.37	19.52
Bra030919.1-P	Field mustard	nucleus	20.16	16.67
Bra001541.1-P	Field mustard	nucleus	22.53	16.19
Bra021543.1-P	Field mustard	nucleus	22.92	15.89
Bra027355.1-P	Field mustard	nucleus	22.92	15.3

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra009272	EnsemblPlants:Bra009272.1
EnsemblPlants:Bra009272.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CYH5	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF41	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002543795	SEG:seg

Description

AT5G07310 (E=4e-097) | AP2 domain-containing transcription factor, putative

Coordinates

chrA10:-:15914197..15915279

Molecular Weight (calculated)

28347.1 Da

IEP (calculated)

6.515

GRAVY (calculated)

-1.023

Length

253 amino acids

Sequence
(BLAST)

001: MMPFGAGESD ERKEADDEEN IFPFLSARSQ YDTRAMVSAL TQVIGNQSST HDSNQHHPVE YNQQDPIQHV PPTQDQGNLR KRHYRGVRQR PWGKWAAEIR
101: DPQKAARVWL GTFETAEAAA LAYDEAALKF KGSKAKLNFP ERAQLASNAS TITGLPNYHS SNNQMYYSNP QTNPQTMPYY NQYYYNQYLQ QGGNSNDALS
201: YSLAGGETGG SMYNHQSISN TTSSSSGGSS RPQQEQDYAR FWHFGDSSPS SGF

Best Arabidopsis Sequence Match ( AT5G07310.1 )
(BLAST)

001: MANSGNYGKR PFRGDESDEK KEADDDENIF PFFSARSQYD MRAMVSALTQ VIGNQSSSHD NNQHQPVVYN QQDPNPPAPP TQDQGLLRKR HYRGVRQRPW
101: GKWAAEIRDP QKAARVWLGT FETAEAAALA YDNAALKFKG SKAKLNFPER AQLASNTSTT TGPPNYYSSN NQIYYSNPQT NPQTIPYFNQ YYYNQYLHQG
201: GNSNDALSYS LAGGETGGSM YNHQTLSTTN SSSSGGSSRQ QDDEQDYARY LRFGDSSPPN SGF

Arabidopsis Description

ERF115Ethylene-responsive transcription factor ERF115 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY29]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.