Factsheet for Bra016063.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96402	Canola	nucleus	96.41	96.8
CDX72909	Canola	nucleus	64.54	86.17
Bra003883.1-P	Field mustard	nucleus	61.75	63.79
AT1G72360.2	Thale cress	nucleus	55.78	53.44
Bra021401.1-P	Field mustard	nucleus	29.08	34.27
Bra001640.1-P	Field mustard	nucleus	27.49	28.16
Bra022176.1-P	Field mustard	nucleus	27.09	28.1
Bra021200.1-P	Field mustard	nucleus	27.09	27.98
Bra034624.1-P	Field mustard	nucleus	17.13	25.44
Bra030919.1-P	Field mustard	nucleus	30.28	24.84
Bra021543.1-P	Field mustard	nucleus	35.86	24.66
Bra001541.1-P	Field mustard	nucleus	33.47	23.86
Bra005480.1-P	Field mustard	nucleus	20.32	23.61
Bra008835.1-P	Field mustard	nucleus	19.92	23.04
Bra027355.1-P	Field mustard	nucleus	34.26	22.69
Bra021871.1-P	Field mustard	nucleus	19.52	22.69
Bra019622.1-P	Field mustard	nucleus	19.12	21.15
Bra006195.1-P	Field mustard	nucleus	21.12	20.54
Bra028703.1-P	Field mustard	nucleus	20.72	20.39
Bra023404.1-P	Field mustard	nucleus	19.92	20.08
Bra009272.1-P	Field mustard	nucleus	19.52	19.37
Bra029302.1-P	Field mustard	nucleus	19.12	18.9
Bra005932.1-P	Field mustard	nucleus	19.12	18.82
Bra011529.1-P	Field mustard	nucleus	17.53	16.79
Bra017656.1-P	Field mustard	nucleus	17.53	16.3
Bra031903.1-P	Field mustard	nucleus	22.31	14.78
Bra024325.1-P	Field mustard	nucleus	22.71	14.43
Bra037794.1-P	Field mustard	nucleus	21.12	13.91

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra016063	EnsemblPlants:Bra016063.1
EnsemblPlants:Bra016063.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DHT6	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002541BDE	SEG:seg

Description

AT1G72360 (E=4e-053) | ethylene-responsive element-binding protein, putative

Coordinates

chrA07:+:19599372..19600127

Molecular Weight (calculated)

28601.3 Da

IEP (calculated)

4.887

GRAVY (calculated)

-0.844

Length

251 amino acids

Sequence
(BLAST)

001: MCGGAVISDY IAPRAGKPSW RRDDVVDLTL DDLEGDSQYY PWLGMKREDG TRRKKKTNKS SSSEYRGIRR RPWGRWAAEI RDPIKGVRVW LGTFNTAEDA
101: ARAYDFEAKR LRGVKAKLNF PNESPASSSR KRKASSPPPT QRPQVRKIEE KREDVDVLGG GCFDFLWEEN NNADTSQVDT QWLEDVIIMG DDAEKRQKGY
201: YDCEGNVDEL LSFQNETECF LQTPFMEGGN CGFSTSLTSL LDEVNVMDLW S

Best Arabidopsis Sequence Match ( AT1G72360.2 )
(BLAST)

001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASGSASDGKK KQSSRYKGIR RRPWGRWAAE IRDPIKGVRV
101: WLGTFNTAEE AARAYDLEAK RIRGAKAKLN FPNESSGKRK AKAKTVQQVE ENHEADLDVA VVSSAPSSSC LDFLWEENNP DTLLIDTQWL EDIIMGDANK
201: KHEPNDSEEA NNVDASLLSE ELLAFENQTE YFSQMPFTEG NCDSSTSLSS LFDGGNDMGL WS

Arabidopsis Description

HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.