Factsheet for Bra003883.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68269	Canola	nucleus	88.07	96.83
CDY50643	Canola	nucleus	88.07	94.27
Bra016063.1-P	Field mustard	nucleus	63.79	61.75
AT1G72360.2	Thale cress	nucleus	56.79	52.67
Bra021401.1-P	Field mustard	nucleus	31.28	35.68
Bra001640.1-P	Field mustard	nucleus	29.63	29.39
Bra022176.1-P	Field mustard	nucleus	28.4	28.51
Bra021200.1-P	Field mustard	nucleus	28.4	28.4
Bra034624.1-P	Field mustard	nucleus	18.93	27.22
Bra030919.1-P	Field mustard	nucleus	31.69	25.16
Bra021543.1-P	Field mustard	nucleus	35.8	23.84
Bra001541.1-P	Field mustard	nucleus	34.16	23.58
Bra027355.1-P	Field mustard	nucleus	36.63	23.48
Bra021871.1-P	Field mustard	nucleus	19.75	22.22
Bra008835.1-P	Field mustard	nucleus	19.75	22.12
Bra005480.1-P	Field mustard	nucleus	19.34	21.76
Bra019622.1-P	Field mustard	nucleus	18.93	20.26
Bra006195.1-P	Field mustard	nucleus	21.4	20.16
Bra028703.1-P	Field mustard	nucleus	20.99	20.0
Bra023404.1-P	Field mustard	nucleus	20.16	19.68
Bra009272.1-P	Field mustard	nucleus	19.75	18.97
Bra005932.1-P	Field mustard	nucleus	19.34	18.43
Bra029302.1-P	Field mustard	nucleus	18.93	18.11
Bra017656.1-P	Field mustard	nucleus	19.75	17.78
Bra011529.1-P	Field mustard	nucleus	18.93	17.56
Bra031903.1-P	Field mustard	nucleus	24.28	15.57
Bra024325.1-P	Field mustard	nucleus	24.28	14.94
Bra037794.1-P	Field mustard	nucleus	23.05	14.7

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra003883	EnsemblPlants:Bra003883.1
EnsemblPlants:Bra003883.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CI50	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000254180A	SEG:seg

Description

AT1G72360 (E=6e-051) | ethylene-responsive element-binding protein, putative

Coordinates

chrA07:-:15541576..15542307

Molecular Weight (calculated)

27319.7 Da

IEP (calculated)

5.150

GRAVY (calculated)

-0.861

Length

243 amino acids

Sequence
(BLAST)

001: MCGGAVIADY ITPSRSSRSS KSTWRRDNDV VDLTLDDFES ENEDIYGFST AKPAAPLRRS SPPQEDRRKK KKSSEYRGIR RRPWGRWAAE IRDPIKGVRV
101: WLGTFNTAED AARAYDLEAK RIRGAKAKLN FPNESPSRKR KASSSSSPQP QVKIEEKQEV AVASSLWEGD TIQVDTQWLE DAIKGGEKEG KRQKGCDGEG
201: DVNALLSEEL LAFEKETECF FQMPFMEGGS SVFEGDDVLD LWS

Best Arabidopsis Sequence Match ( AT1G72360.2 )
(BLAST)

001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASGSASDGKK KQSSRYKGIR RRPWGRWAAE IRDPIKGVRV
101: WLGTFNTAEE AARAYDLEAK RIRGAKAKLN FPNESSGKRK AKAKTVQQVE ENHEADLDVA VVSSAPSSSC LDFLWEENNP DTLLIDTQWL EDIIMGDANK
201: KHEPNDSEEA NNVDASLLSE ELLAFENQTE YFSQMPFTEG NCDSSTSLSS LFDGGNDMGL WS

Arabidopsis Description

HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.