Factsheet for Bra008835.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69647	Canola	nucleus	98.62	98.62
CDY09787	Canola	nucleus	97.7	95.07
AT5G13330.1	Thale cress	nucleus	76.5	78.3
Bra023404.1-P	Field mustard	nucleus	85.25	74.3
Bra006195.1-P	Field mustard	nucleus	85.71	72.09
KRH01504	Soybean	nucleus	43.32	38.84
VIT_01s0150g00120.t01	Wine grape	nucleus, plastid	41.47	37.97
KRH45195	Soybean	nucleus	45.62	35.74
HORVU2Hr1G071270.4	Barley	nucleus	29.03	35.59
Bra019622.1-P	Field mustard	nucleus	34.56	33.04
GSMUA_Achr10P...	Banana	nucleus	34.56	33.04
Bra005480.1-P	Field mustard	nucleus	32.72	32.87
TraesCS2A01G288000.1	Wheat	nucleus	37.33	32.27
TraesCS2D01G286300.1	Wheat	nucleus	37.33	32.02
Bra009272.1-P	Field mustard	nucleus	36.87	31.62
Bra029302.1-P	Field mustard	nucleus	36.87	31.5
Bra034624.1-P	Field mustard	nucleus	24.42	31.36
TraesCS2B01G304800.1	Wheat	nucleus	36.41	31.23
Bra021871.1-P	Field mustard	nucleus	30.88	31.02
Bra028703.1-P	Field mustard	nucleus	35.94	30.59
Bra005932.1-P	Field mustard	nucleus	35.94	30.59
Os04t0398000-02	Rice	nucleus	36.41	29.48
GSMUA_Achr6P08140_001	Banana	nucleus	35.94	28.06
GSMUA_Achr2P21430_001	Banana	nucleus, plastid	35.02	26.12
Bra021401.1-P	Field mustard	nucleus	24.88	25.35
Bra021200.1-P	Field mustard	nucleus	24.88	22.22
Bra022176.1-P	Field mustard	nucleus	24.42	21.9
Bra001640.1-P	Field mustard	nucleus	24.42	21.63
Bra011529.1-P	Field mustard	nucleus	25.35	20.99
Bra017656.1-P	Field mustard	nucleus	25.35	20.37
Bra016063.1-P	Field mustard	nucleus	23.04	19.92
Bra003883.1-P	Field mustard	nucleus	22.12	19.75
Bra031903.1-P	Field mustard	nucleus	30.41	17.41
Bra024325.1-P	Field mustard	nucleus	30.88	16.96
Bra037794.1-P	Field mustard	nucleus	29.03	16.54
OQU81440	Sorghum	nucleus	37.79	16.53
Bra001541.1-P	Field mustard	nucleus	23.96	14.77
Bra030919.1-P	Field mustard	nucleus	19.82	14.05
Bra021543.1-P	Field mustard	nucleus	23.5	13.97
Bra027355.1-P	Field mustard	nucleus	23.5	13.46

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra008835	EnsemblPlants:Bra008835.1
EnsemblPlants:Bra008835.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4CX88	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF58	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000254396E	SEG:seg

Description

AT5G13330 (E=7e-051) Rap2.6L | Rap2.6L (related to AP2 6L); DNA binding / transcription factor

Coordinates

chrA10:-:14040245..14042345

Molecular Weight (calculated)

24765.4 Da

IEP (calculated)

7.831

GRAVY (calculated)

-1.077

Length

217 amino acids

Sequence
(BLAST)

001: MISSLSRAIE YPAADGQERS DSPVKQELSK SDQLQQDQDQ PRRKHYRGVR QRPWGKWAAE IRDPKKAARV WLGTFETAEE AAFAYDRAAL KFKGTKAKLN
101: FPEHLQGPST TTYVASQSGI DHVPRGGSEL MNSPPPLPTT WPTNYNQDIL QYAQLLTSNN DVDLSYYTSS LLSQQQQPFS TPSSSSSSLS SQQQQQLHQQ
201: REEEKNYGYH YYNYPRE

Best Arabidopsis Sequence Match ( AT5G13330.1 )
(BLAST)

001: MVSALSRVIE NPTDPPVKQE LDKSDQHQPD QDQPRRRHYR GVRQRPWGKW AAEIRDPKKA ARVWLGTFET AEEAALAYDR AALKFKGTKA KLNFPERVQG
101: PTTTTTISHA PRGVSESMNS PPPRPGPPST TTTSWPMTYN QDILQYAQLL TSNNEVDLSY YTSTLFSQPF STPSSSSSSS QQTQQQQLQQ QQQQREEEEK
201: NYGYNYYNYP RE

Arabidopsis Description

ERF113Rap2.6L [Source:UniProtKB/TrEMBL;Acc:A0A178UKL8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.