Factsheet for VIT_01s0150g00120.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 6
plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G13330.1	Thale cress	nucleus	38.82	43.4
HORVU2Hr1G071270.4	Barley	nucleus	32.07	42.94
Bra008835.1-P	Field mustard	nucleus	37.97	41.47
CDX69647	Canola	nucleus	37.97	41.47
KRH01504	Soybean	nucleus	41.35	40.5
CDY09787	Canola	nucleus	37.55	39.91
VIT_17s0000g00200.t01	Wine grape	nucleus	40.51	39.02
CDX78517	Canola	nucleus	40.08	36.82
GSMUA_Achr10P...	Banana	nucleus	35.02	36.56
Bra023404.1-P	Field mustard	nucleus	38.4	36.55
CDX85656	Canola	nucleus	38.4	36.55
Bra006195.1-P	Field mustard	nucleus	39.66	36.43
CDX70498	Canola	nucleus	39.66	36.43
TraesCS2A01G288000.1	Wheat	nucleus	38.4	36.26
KRH45195	Soybean	nucleus	41.77	35.74
TraesCS2B01G304800.1	Wheat	nucleus	37.97	35.57
TraesCS2D01G286300.1	Wheat	nucleus	37.97	35.57
Os04t0398000-02	Rice	nucleus	40.08	35.45
CDX91131	Canola	nucleus	37.97	35.43
GSMUA_Achr6P08140_001	Banana	nucleus	37.55	32.01
GSMUA_Achr2P21430_001	Banana	nucleus, plastid	39.24	31.96
VIT_07s0031g00710.t01	Wine grape	nucleus	20.68	26.34
VIT_07s0031g00720.t01	Wine grape	nucleus	23.63	26.05
VIT_14s0068g01040.t01	Wine grape	nucleus	33.33	24.53
VIT_03s0063g00460.t01	Wine grape	nucleus	23.63	22.67
VIT_07s0031g01980.t01	Wine grape	nucleus	32.91	22.16
VIT_05s0077g01860.t01	Wine grape	nucleus	22.78	20.85
VIT_07s0005g00820.t01	Wine grape	nucleus	22.78	20.85
VIT_18s0072g00260.t01	Wine grape	nucleus	39.66	19.87
OQU81440	Sorghum	nucleus	40.08	19.15
VIT_09s0002g00470.t01	Wine grape	nucleus	23.63	14.78

Protein Annotations

EntrezGene:100250476	wikigene:100250476	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CBI29260	ProteinID:CBI29260.3	UniProt:D7TFI7	InterPro:DNA-bd_dom_sf	EMBL:FN595770	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009414	GO:GO:0009628	GO:GO:0009651
GO:GO:0009719	GO:GO:0009723	GO:GO:0009737	GO:GO:0009751	GO:GO:0009753	GO:GO:0009987
GO:GO:0019748	GO:GO:0019760	GO:GO:0043565	GO:GO:0045893	GO:GO:0071497	InterPro:IPR001471
InterPro:IPR036955	EntrezGene:LOC100250476	wikigene:LOC100250476	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF58	SMART:SM00380	SUPFAM:SSF54171	TIGR:TC64226	UniParc:UPI00015CD090
ArrayExpress:VIT_01s0150g00120	EnsemblPlantsGene:VIT_01s0150g00120	EnsemblPlants:VIT_01s0150g00120.t01	unigene:Vvi.17271	RefSeq:XP_002267814	RefSeq:XP_002267814.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:22567820..22570479

Molecular Weight (calculated)

26393.2 Da

IEP (calculated)

6.804

GRAVY (calculated)

-0.857

Length

237 amino acids

Sequence
(BLAST)

001: MSAMVSALSQ VIGTRDNNPS ATRMVQSADS SSALSESSQL PPQDQGNVRR RHYRGVRQRP WGKWAAEIRD PKKAARVWLG TFDTAEDAAL AYDQAALRFK
101: GTKAKLNFPE RVQQQTSQIG YFMDHAGMFD DQSHRPPAMP APPPPLPPPS LPHEFLQYGQ LLSSSSDADF AYFSSNLYNQ PQQQPPYFPQ PSSTTTTTTS
201: SSSTTTSDQY YSSQSSSSFY YPHYGEDFNT SYHPPSE

Best Arabidopsis Sequence Match ( AT5G13330.1 )
(BLAST)

001: MVSALSRVIE NPTDPPVKQE LDKSDQHQPD QDQPRRRHYR GVRQRPWGKW AAEIRDPKKA ARVWLGTFET AEEAALAYDR AALKFKGTKA KLNFPERVQG
101: PTTTTTISHA PRGVSESMNS PPPRPGPPST TTTSWPMTYN QDILQYAQLL TSNNEVDLSY YTSTLFSQPF STPSSSSSSS QQTQQQQLQQ QQQQREEEEK
201: NYGYNYYNYP RE

Arabidopsis Description

ERF113Rap2.6L [Source:UniProtKB/TrEMBL;Acc:A0A178UKL8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.