Factsheet for VIT_17s0000g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118190.2.1	Tomato	nucleus	41.06	41.39
KRH63877	Soybean	nucleus	33.33	40.8
VIT_01s0150g00120.t01	Wine grape	nucleus, plastid	39.02	40.51
PGSC0003DMT400036934	Potato	nucleus	44.31	39.49
Bra019622.1-P	Field mustard	nucleus	36.18	39.21
AT5G61890.1	Thale cress	nucleus	38.21	37.9
CDY53152	Canola	nucleus	34.55	37.61
KRH63879	Soybean	nucleus	39.84	37.4
CDX70027	Canola	nucleus	38.21	37.15
CDX98982	Canola	nucleus	38.21	37.15
KRH54084	Soybean	nucleus	40.24	36.8
Bra009272.1-P	Field mustard	nucleus	37.8	36.76
CDY14051	Canola	nucleus	36.99	35.55
Bra029302.1-P	Field mustard	nucleus	36.59	35.43
Bra005932.1-P	Field mustard	nucleus	36.59	35.29
CDX78288	Canola	nucleus	36.59	35.29
GSMUA_Achr11P...	Banana	nucleus	36.18	34.77
CDY55173	Canola	nucleus	35.37	34.12
Bra028703.1-P	Field mustard	nucleus	35.37	34.12
AT5G07310.1	Thale cress	nucleus	36.18	33.84
VIT_07s0031g00710.t01	Wine grape	nucleus	19.51	25.81
VIT_07s0031g00720.t01	Wine grape	nucleus	22.36	25.58
VIT_14s0068g01040.t01	Wine grape	nucleus	32.93	25.16
VIT_03s0063g00460.t01	Wine grape	nucleus	24.8	24.7
VIT_07s0031g01980.t01	Wine grape	nucleus	34.15	23.86
VIT_05s0077g01860.t01	Wine grape	nucleus	23.58	22.39
VIT_07s0005g00820.t01	Wine grape	nucleus	22.36	21.24
CDY71587	Canola	cytosol	5.69	20.29
VIT_18s0072g00260.t01	Wine grape	nucleus	35.77	18.6
VIT_09s0002g00470.t01	Wine grape	nucleus	23.58	15.3

Protein Annotations

EntrezGene:100245655	wikigene:100245655	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ProteinID:CCB43365	ProteinID:CCB43365.1	InterPro:DNA-bd_dom_sf	UniProt:F6GT44	EMBL:FN594950	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100245655
wikigene:LOC100245655	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF58
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000210A2ED	ArrayExpress:VIT_17s0000g00200	EnsemblPlantsGene:VIT_17s0000g00200	EnsemblPlants:VIT_17s0000g00200.t01
RefSeq:XP_002280924	RefSeq:XP_002280924.1	RefSeq:XP_010663806.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:108842..110719

Molecular Weight (calculated)

27552.9 Da

IEP (calculated)

9.675

GRAVY (calculated)

-1.004

Length

246 amino acids

Sequence
(BLAST)

001: MSAMVSALTQ VIGNTDKNPL HDLGNPSPIS HHSATTPHDQ PSQLLQDQGN QLRRRHYRGV RQRPWGKWAA EIRDPNKAAR VWLGTFDTAE DAALAYDEAA
101: LRFKGNKAKL NFPERVQGRS ELGYLTNRQD FLLPQQQQLP NPAVPPLPHP SLPRPSYPNL HHYAQLLPGG GGDLNHAMSS LYGREASTTQ SLSTTSSSSS
201: TTSHPQHHQR RRQREEEELQ QPQLLQFSSL FGSSSSNDPH NNRRDD

Best Arabidopsis Sequence Match ( AT5G61890.1 )
(BLAST)

001: MYGKRPFGGD ESEEREEDEN LFPVFSARSQ HDMRVMVSAL TQVIGNQQSK SHDNISSIDD NYPSVYNPQD PNQQVAPTHQ DQGDLRRRHY RGVRQRPWGK
101: WAAEIRDPKK AARVWLGTFE TAESAALAYD EAALKFKGSK AKLNFPERVQ LGSNSTYYSS NQIPQMEPQS IPNYNQYYHD ASSGDMLSFN LGGGYGSGTG
201: YSMSHDNSTT TAATTSSSSG GSSRQQEEQD YARFWRFGDS SSSPHSGY

Arabidopsis Description

ERF114Ethylene-responsive transcription factor ERF114 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.