Factsheet for Bra034624.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76278	Canola	nucleus	98.22	62.64
Bra011529.1-P	Field mustard	nucleus	79.88	51.53
AT4G34410.1	Thale cress	nucleus	79.29	50.0
Bra017656.1-P	Field mustard	nucleus	79.29	49.63
GSMUA_Achr7P18930_001	Banana	nucleus	34.91	42.45
PGSC0003DMT400021312	Potato	nucleus, plastid	38.46	42.21
PGSC0003DMT400021311	Potato	nucleus	28.99	31.61
Os08t0474000-01	Rice	nucleus	40.83	31.51
Solyc10g050970.1.1	Tomato	nucleus	39.65	30.04
KRH50274	Soybean	nucleus	39.65	29.13
KRH71142	Soybean	nucleus	36.09	28.37
GSMUA_Achr3P06960_001	Banana	nucleus	37.87	27.23
GSMUA_Achr6P02310_001	Banana	nucleus	31.36	26.77
VIT_03s0063g00460.t01	Wine grape	nucleus	38.46	26.32
TraesCS1A01G370700.1	Wheat	nucleus	40.24	25.66
TraesCS1B01G389800.1	Wheat	nucleus	39.05	25.48
Bra021401.1-P	Field mustard	nucleus	31.95	25.35
TraesCS5A01G238400.1	Wheat	nucleus	36.09	25.31
TraesCS5B01G236900.1	Wheat	nucleus	36.09	25.21
TraesCS1A01G370600.1	Wheat	nucleus	37.87	25.0
Zm00001d031796_P001	Maize	nucleus	39.65	24.91
TraesCS1D01G376600.1	Wheat	nucleus	39.05	24.91
TraesCS5D01G245300.1	Wheat	nucleus	36.09	24.8
TraesCS1B01G389900.1	Wheat	nucleus	39.05	24.72
TraesCS1D01G376800.1	Wheat	nucleus	39.05	24.72
TraesCS1B01G389700.1	Wheat	nucleus	36.69	24.7
Bra021871.1-P	Field mustard	nucleus	31.36	24.54
TraesCS1D01G376700.1	Wheat	nucleus	38.46	24.44
Bra008835.1-P	Field mustard	nucleus	31.36	24.42
TraesCS1A01G370400.1	Wheat	nucleus	37.28	24.23
Solyc01g108240.2.1	Tomato	nucleus	42.01	24.07
HORVU1Hr1G082310.1	Barley	nucleus	37.28	23.86
PGSC0003DMT400066343	Potato	nucleus	41.42	23.73
Bra005480.1-P	Field mustard	nucleus	30.18	23.61
Zm00001d005892_P001	Maize	nucleus	35.5	22.81
Os09t0457900-01	Rice	nucleus	36.69	22.63
OQU80635	Sorghum	nucleus	39.05	22.6
TraesCS1D01G376500.1	Wheat	nucleus	36.09	22.51
Bra019622.1-P	Field mustard	nucleus	30.18	22.47
EER96855	Sorghum	mitochondrion, nucleus	39.05	22.45
HORVU5Hr1G068450.1	Barley	nucleus	35.5	22.39
Bra006195.1-P	Field mustard	nucleus	33.14	21.71
Bra023404.1-P	Field mustard	nucleus	31.36	21.29
Bra021200.1-P	Field mustard	nucleus	30.18	20.99
Bra022176.1-P	Field mustard	nucleus	29.59	20.66
Bra005932.1-P	Field mustard	nucleus	29.59	19.61
Bra001640.1-P	Field mustard	nucleus	28.4	19.59
Bra009272.1-P	Field mustard	nucleus	28.99	19.37
Bra029302.1-P	Field mustard	nucleus	28.99	19.29
Bra003883.1-P	Field mustard	nucleus	27.22	18.93
Bra028703.1-P	Field mustard	nucleus	28.4	18.82
Bra016063.1-P	Field mustard	nucleus	25.44	17.13
Bra031903.1-P	Field mustard	nucleus	31.36	13.98
Bra037794.1-P	Field mustard	nucleus	31.36	13.91
Bra024325.1-P	Field mustard	nucleus	31.95	13.67
Bra001541.1-P	Field mustard	nucleus	28.4	13.64
Bra030919.1-P	Field mustard	nucleus	24.26	13.4
Bra027355.1-P	Field mustard	nucleus	29.59	13.19
Bra021543.1-P	Field mustard	nucleus	28.4	13.15

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra034624
EnsemblPlants:Bra034624.1	EnsemblPlants:Bra034624.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M4F0M9	PFAM:PF00847	PIRSF:PIRSF038123
PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF62	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI00025463A7	SEG:seg	:	:	:	:

Description

AT4G34410 (E=4e-037) RRTF1 | RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1); DNA binding / transcription factor

Coordinates

chrA08:-:12440649..12441158

Molecular Weight (calculated)

18574.7 Da

IEP (calculated)

9.453

GRAVY (calculated)

-0.759

Length

169 amino acids

Sequence
(BLAST)

001: MRQHVVVVEE DGVSSNSSGR ESSAKAKKAE GGKIRKRRNK KNGYRGVRQR PWGKFAAEIR DPKRATRVWL GTFEPAEDAA RAYDRAAIGF RGPRAKLNFP
101: FMDYTSSPVA ADTSASVSVS TSVSAVDSGE AEQWRGGECD MDEYLKMMMM DFGNGDSSDS GNTIADMFQ

Best Arabidopsis Sequence Match ( AT4G34410.1 )
(BLAST)

001: MHYPNNRTEF VGAPAPTRYQ KEQLSPEQEL SVIVSALQHV ISGENETAPC QGFSSDSTVI SAGMPRLDSD TCQVCRIEGC LGCNYFFAPN QRIEKNHQQE
101: EEITSSSNRR RESSPVAKKA EGGGKIRKRK NKKNGYRGVR QRPWGKFAAE IRDPKRATRV WLGTFETAED AARAYDRAAI GFRGPRAKLN FPFVDYTSSV
201: SSPVAADDIG AKASASASVS ATDSVEAEQW NGGGGDCNME EWMNMMMMMD FGNGDSSDSG NTIADMFQ

Arabidopsis Description

ERF109Ethylene-responsive transcription factor ERF109 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.