Factsheet for AT4G34410.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45310	Canola	nucleus	79.48	81.61
CDX72481	Canola	nucleus	78.36	81.4
Bra017656.1-P	Field mustard	nucleus	80.97	80.37
Bra034624.1-P	Field mustard	nucleus	50.0	79.29
CDX76278	Canola	nucleus	77.61	78.49
CDY46253	Canola	nucleus	75.75	77.78
CDX75430	Canola	nucleus	75.37	77.1
CDX69054	Canola	nucleus	75.75	76.89
Bra011529.1-P	Field mustard	nucleus	75.0	76.72
CDX69056	Canola	nucleus	53.73	70.59
PGSC0003DMT400021311	Potato	nucleus	28.73	49.68
PGSC0003DMT400021312	Potato	nucleus, plastid	26.49	46.1
KRH50274	Soybean	nucleus	36.57	42.61
GSMUA_Achr7P18930_001	Banana	nucleus	22.01	42.45
VIT_03s0063g00460.t01	Wine grape	nucleus	38.06	41.3
Solyc10g050970.1.1	Tomato	nucleus	33.96	40.81
KRH71142	Soybean	nucleus	32.09	40.0
GSMUA_Achr3P06960_001	Banana	nucleus	35.07	40.0
GSMUA_Achr6P02310_001	Banana	nucleus	28.36	38.38
TraesCS1A01G370700.1	Wheat	nucleus	36.19	36.6
TraesCS1B01G389700.1	Wheat	nucleus	33.96	36.26
TraesCS1D01G376800.1	Wheat	nucleus	35.45	35.58
TraesCS1B01G389800.1	Wheat	nucleus	34.33	35.52
TraesCS1B01G389900.1	Wheat	nucleus	35.07	35.21
TraesCS5B01G236900.1	Wheat	nucleus	31.72	35.12
TraesCS5A01G238400.1	Wheat	nucleus	31.34	34.85
Solyc01g108240.2.1	Tomato	nucleus	38.06	34.58
PGSC0003DMT400066343	Potato	nucleus	38.06	34.58
TraesCS1A01G370600.1	Wheat	nucleus	32.84	34.38
TraesCS1D01G376600.1	Wheat	nucleus	33.96	34.34
TraesCS1A01G370400.1	Wheat	nucleus	33.21	34.23
Zm00001d031796_P001	Maize	nucleus	34.33	34.2
TraesCS5D01G245300.1	Wheat	nucleus	31.34	34.15
HORVU1Hr1G082310.1	Barley	nucleus	33.21	33.71
TraesCS1D01G376700.1	Wheat	nucleus	32.84	33.08
Os08t0474000-01	Rice	nucleus	26.87	32.88
OQU80635	Sorghum	nucleus	34.7	31.85
AT2G47520.1	Thale cress	nucleus	20.15	31.58
Zm00001d005892_P001	Maize	nucleus	30.97	31.56
Os09t0457900-01	Rice	nucleus	32.09	31.39
TraesCS1D01G376500.1	Wheat	nucleus	31.72	31.37
AT1G43160.1	Thale cress	nucleus	22.39	31.25
EER96855	Sorghum	mitochondrion, nucleus	33.96	30.95
HORVU5Hr1G068450.1	Barley	nucleus	30.6	30.6
AT5G13330.1	Thale cress	nucleus	22.39	28.3
AT2G33710.2	Thale cress	nucleus	22.39	25.97
AT5G50080.2	Thale cress	nucleus	22.01	25.76
AT5G61890.1	Thale cress	nucleus	21.64	23.39
AT3G16770.1	Thale cress	nucleus	20.9	22.58
AT5G07310.1	Thale cress	nucleus	22.01	22.43
AT5G64750.1	Thale cress	nucleus	26.87	18.41
AT1G72360.2	Thale cress	nucleus	17.91	18.32
AT1G53910.1	Thale cress	nucleus	20.52	15.36
AT3G14230.1	Thale cress	nucleus	20.9	14.78

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EntrezGene:829591	ProteinID:AEE86369.1	EMBL:AF325091	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ArrayExpress:AT4G34410	EnsemblPlantsGene:AT4G34410	RefSeq:AT4G34410	TAIR:AT4G34410	RefSeq:AT4G34410-TAIR-G
EnsemblPlants:AT4G34410.1	TAIR:AT4G34410.1	EMBL:AY064151	EMBL:AY120700	Unigene:At.48936	ProteinID:CAB36718.1
ProteinID:CAB80158.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006950	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009605	GO:GO:0009607	GO:GO:0009719	GO:GO:0009873
GO:GO:0009987	GO:GO:0010087	GO:GO:0010200	GO:GO:0050832	GO:GO:0051301	InterPro:IPR001471
InterPro:IPR036955	RefSeq:NP_195167.1	PFAM:PF00847	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009009	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF62
UniProt:Q9SZ06	Symbol:RRTF1	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00000A3FFD	SEG:seg

Description

ERF109Ethylene-responsive transcription factor ERF109 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ06]

Coordinates

chr4:+:16451876..16453260

Molecular Weight (calculated)

29448.2 Da

IEP (calculated)

6.292

GRAVY (calculated)

-0.707

Length

268 amino acids

Sequence
(BLAST)

001: MHYPNNRTEF VGAPAPTRYQ KEQLSPEQEL SVIVSALQHV ISGENETAPC QGFSSDSTVI SAGMPRLDSD TCQVCRIEGC LGCNYFFAPN QRIEKNHQQE
101: EEITSSSNRR RESSPVAKKA EGGGKIRKRK NKKNGYRGVR QRPWGKFAAE IRDPKRATRV WLGTFETAED AARAYDRAAI GFRGPRAKLN FPFVDYTSSV
201: SSPVAADDIG AKASASASVS ATDSVEAEQW NGGGGDCNME EWMNMMMMMD FGNGDSSDSG NTIADMFQ

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.