Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17191 | Canola | nucleus | 72.29 | 77.31 |
| Bra005480.1-P | Field mustard | nucleus | 72.29 | 77.31 |
| CDY27952 | Canola | nucleus | 71.0 | 75.93 |
| Bra021871.1-P | Field mustard | nucleus | 67.97 | 72.69 |
| CDY37698 | Canola | mitochondrion | 49.78 | 68.05 |
| CDY53788 | Canola | golgi | 52.38 | 61.73 |
| AT5G13330.1 | Thale cress | nucleus | 30.74 | 33.49 |
| AT2G47520.1 | Thale cress | nucleus | 23.38 | 31.58 |
| AT1G43160.1 | Thale cress | nucleus | 25.11 | 30.21 |
| AT5G50080.2 | Thale cress | nucleus | 26.84 | 27.07 |
| AT5G61890.1 | Thale cress | nucleus | 29.0 | 27.02 |
| AT5G07310.1 | Thale cress | nucleus | 30.74 | 27.0 |
| AT4G34410.1 | Thale cress | nucleus | 25.97 | 22.39 |
| AT3G16770.1 | Thale cress | nucleus | 22.51 | 20.97 |
| AT1G72360.2 | Thale cress | nucleus | 21.21 | 18.7 |
| AT5G64750.1 | Thale cress | nucleus | 29.87 | 17.65 |
| AT3G14230.1 | Thale cress | nucleus | 24.68 | 15.04 |
| AT1G53910.1 | Thale cress | nucleus | 22.94 | 14.8 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | EntrezGene:817936 | ProteinID:AEC08873.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| ArrayExpress:AT2G33710 | EnsemblPlantsGene:AT2G33710 | RefSeq:AT2G33710 | TAIR:AT2G33710 | RefSeq:AT2G33710-TAIR-G | EnsemblPlants:AT2G33710.2 |
| TAIR:AT2G33710.2 | InterPro:DNA-bd_dom_sf | UniProt:F4IFX1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009987 | GO:GO:0010200 | InterPro:IPR001471 | InterPro:IPR036955 |
| RefSeq:NP_001189669.1 | PFAM:PF00847 | PO:PO:0000293 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 |
| PANTHER:PTHR31190:SF41 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0001E92CF3 | SEG:seg | : |
Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
Coordinates
chr2:-:14258809..14260739
Molecular Weight (calculated)
25757.9 Da
IEP (calculated)
6.882
GRAVY (calculated)
-0.866
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVMT TISTEDDRRR QQHASPDRPI K
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVMT TISTEDDRRR QQHASPDRPI K
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.