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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX68269 Canola nucleus 53.82 63.8
CDX72909 Canola nucleus 44.27 61.7
CDY50643 Canola nucleus 52.67 60.79
Bra003883.1-P Field mustard nucleus 52.67 56.79
Bra016063.1-P Field mustard nucleus 53.44 55.78
CDX96402 Canola nucleus 52.67 55.2
AT2G47520.1 Thale cress nucleus 28.63 43.86
AT3G16770.1 Thale cress nucleus 26.34 27.82
AT1G43160.1 Thale cress nucleus 20.23 27.6
AT1G53910.1 Thale cress nucleus 36.26 26.54
AT3G14230.1 Thale cress nucleus 37.02 25.59
AT5G13330.1 Thale cress nucleus 19.08 23.58
AT5G50080.2 Thale cress nucleus 20.23 23.14
AT2G33710.2 Thale cress nucleus 18.7 21.21
AT5G61890.1 Thale cress nucleus 18.7 19.76
AT5G07310.1 Thale cress nucleus 19.47 19.39
AT4G34410.1 Thale cress nucleus 18.32 17.91
AT5G64750.1 Thale cress nucleus 23.28 15.6
Protein Annotations
MapMan:15.5.7.1Gene3D:3.30.730.10EntrezGene:843568UniProt:A0A178W8F1ProteinID:AEE35311.1InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sfArrayExpress:AT1G72360EnsemblPlantsGene:AT1G72360RefSeq:AT1G72360TAIR:AT1G72360RefSeq:AT1G72360-TAIR-G
EnsemblPlants:AT1G72360.2TAIR:AT1G72360.2Unigene:At.35111InterPro:DNA-bd_dom_sfUniProt:F4IDA7GO:GO:0001666
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0006950GO:GO:0007154GO:GO:0007165GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009628GO:GO:0009719GO:GO:0009723GO:GO:0009873GO:GO:0009987GO:GO:0034059
GO:GO:0071369GO:GO:0071456Symbol:HRE1InterPro:IPR001471InterPro:IPR036955RefSeq:NP_001077812.1
ProteinID:OAP14618.1PFAM:PF00847PO:PO:0000230PO:PO:0000293PO:PO:0007095PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0009005PO:PO:0009025
PO:PO:0009030PO:PO:0009046PO:PO:0009047PO:PO:0020030PO:PO:0020100PO:PO:0020137
PO:PO:0025022PRINTS:PR00367PFscan:PS51032PANTHER:PTHR31190PANTHER:PTHR31190:SF66SMART:SM00380
SUPFAM:SSF54171UniParc:UPI00000A71C3SEG:seg:::
Description
HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
Coordinates
chr1:+:27241696..27242968
Molecular Weight (calculated)
29095.3 Da
IEP (calculated)
4.603
GRAVY (calculated)
-0.694
Length
262 amino acids
Sequence
(BLAST)
001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASGSASDGKK KQSSRYKGIR RRPWGRWAAE IRDPIKGVRV
101: WLGTFNTAEE AARAYDLEAK RIRGAKAKLN FPNESSGKRK AKAKTVQQVE ENHEADLDVA VVSSAPSSSC LDFLWEENNP DTLLIDTQWL EDIIMGDANK
201: KHEPNDSEEA NNVDASLLSE ELLAFENQTE YFSQMPFTEG NCDSSTSLSS LFDGGNDMGL WS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.