Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDX68269 | Canola | nucleus | 53.82 | 63.8 |
CDX72909 | Canola | nucleus | 44.27 | 61.7 |
CDY50643 | Canola | nucleus | 52.67 | 60.79 |
Bra003883.1-P | Field mustard | nucleus | 52.67 | 56.79 |
Bra016063.1-P | Field mustard | nucleus | 53.44 | 55.78 |
CDX96402 | Canola | nucleus | 52.67 | 55.2 |
AT2G47520.1 | Thale cress | nucleus | 28.63 | 43.86 |
AT3G16770.1 | Thale cress | nucleus | 26.34 | 27.82 |
AT1G43160.1 | Thale cress | nucleus | 20.23 | 27.6 |
AT1G53910.1 | Thale cress | nucleus | 36.26 | 26.54 |
AT3G14230.1 | Thale cress | nucleus | 37.02 | 25.59 |
AT5G13330.1 | Thale cress | nucleus | 19.08 | 23.58 |
AT5G50080.2 | Thale cress | nucleus | 20.23 | 23.14 |
AT2G33710.2 | Thale cress | nucleus | 18.7 | 21.21 |
AT5G61890.1 | Thale cress | nucleus | 18.7 | 19.76 |
AT5G07310.1 | Thale cress | nucleus | 19.47 | 19.39 |
AT4G34410.1 | Thale cress | nucleus | 18.32 | 17.91 |
AT5G64750.1 | Thale cress | nucleus | 23.28 | 15.6 |
Protein Annotations
MapMan:15.5.7.1 | Gene3D:3.30.730.10 | EntrezGene:843568 | UniProt:A0A178W8F1 | ProteinID:AEE35311.1 | InterPro:AP2/ERF_dom |
InterPro:AP2/ERF_dom_sf | ArrayExpress:AT1G72360 | EnsemblPlantsGene:AT1G72360 | RefSeq:AT1G72360 | TAIR:AT1G72360 | RefSeq:AT1G72360-TAIR-G |
EnsemblPlants:AT1G72360.2 | TAIR:AT1G72360.2 | Unigene:At.35111 | InterPro:DNA-bd_dom_sf | UniProt:F4IDA7 | GO:GO:0001666 |
GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009873 | GO:GO:0009987 | GO:GO:0034059 |
GO:GO:0071369 | GO:GO:0071456 | Symbol:HRE1 | InterPro:IPR001471 | InterPro:IPR036955 | RefSeq:NP_001077812.1 |
ProteinID:OAP14618.1 | PFAM:PF00847 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0007095 | PO:PO:0007103 |
PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009025 |
PO:PO:0009030 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 |
PO:PO:0025022 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 |
SUPFAM:SSF54171 | UniParc:UPI00000A71C3 | SEG:seg | : | : | : |
Description
HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
Coordinates
chr1:+:27241696..27242968
Molecular Weight (calculated)
29095.3 Da
IEP (calculated)
4.603
GRAVY (calculated)
-0.694
Length
262 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASGSASDGKK KQSSRYKGIR RRPWGRWAAE IRDPIKGVRV
101: WLGTFNTAEE AARAYDLEAK RIRGAKAKLN FPNESSGKRK AKAKTVQQVE ENHEADLDVA VVSSAPSSSC LDFLWEENNP DTLLIDTQWL EDIIMGDANK
201: KHEPNDSEEA NNVDASLLSE ELLAFENQTE YFSQMPFTEG NCDSSTSLSS LFDGGNDMGL WS
101: WLGTFNTAEE AARAYDLEAK RIRGAKAKLN FPNESSGKRK AKAKTVQQVE ENHEADLDVA VVSSAPSSSC LDFLWEENNP DTLLIDTQWL EDIIMGDANK
201: KHEPNDSEEA NNVDASLLSE ELLAFENQTE YFSQMPFTEG NCDSSTSLSS LFDGGNDMGL WS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.