Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34977 | Canola | nucleus | 81.05 | 83.4 |
| Bra021200.1-P | Field mustard | nucleus | 81.05 | 82.72 |
| CDY28337 | Canola | nucleus | 79.44 | 81.07 |
| CDX82392 | Canola | nucleus | 79.44 | 80.41 |
| CDX95906 | Canola | nucleus | 79.03 | 80.33 |
| CDY54628 | Canola | nucleus | 79.03 | 80.0 |
| Bra001640.1-P | Field mustard | nucleus | 78.23 | 79.18 |
| CDX92094 | Canola | nucleus | 77.02 | 78.93 |
| Bra022176.1-P | Field mustard | nucleus | 77.02 | 78.93 |
| KRH12100 | Soybean | nucleus | 41.94 | 46.64 |
| KRH37061 | Soybean | nucleus | 43.55 | 45.57 |
| VIT_05s0077g01860.t01 | Wine grape | nucleus | 46.77 | 44.79 |
| AT2G47520.1 | Thale cress | nucleus | 29.44 | 42.69 |
| Solyc01g065980.2.1 | Tomato | nucleus | 42.34 | 41.34 |
| PGSC0003DMT400043311 | Potato | nucleus | 41.94 | 39.39 |
| AT1G72360.2 | Thale cress | nucleus | 27.82 | 26.34 |
| AT1G43160.1 | Thale cress | nucleus | 20.16 | 26.04 |
| AT5G13330.1 | Thale cress | nucleus | 21.77 | 25.47 |
| AT5G50080.2 | Thale cress | nucleus | 21.77 | 23.58 |
| AT2G33710.2 | Thale cress | nucleus | 20.97 | 22.51 |
| AT3G14230.1 | Thale cress | nucleus | 32.66 | 21.37 |
| AT1G53910.1 | Thale cress | nucleus | 30.65 | 21.23 |
| AT4G34410.1 | Thale cress | nucleus | 22.58 | 20.9 |
| AT5G61890.1 | Thale cress | nucleus | 20.56 | 20.56 |
| AT5G07310.1 | Thale cress | nucleus | 21.37 | 20.15 |
| AT5G64750.1 | Thale cress | nucleus | 25.0 | 15.86 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | EntrezGene:820929 | ProteinID:AEE75863.1 | EMBL:AF003096 | InterPro:AP2/ERF_dom |
| InterPro:AP2/ERF_dom_sf | ArrayExpress:AT3G16770 | EnsemblPlantsGene:AT3G16770 | RefSeq:AT3G16770 | TAIR:AT3G16770 | RefSeq:AT3G16770-TAIR-G |
| EnsemblPlants:AT3G16770.1 | TAIR:AT3G16770.1 | EMBL:AY035100 | EMBL:AY059917 | EMBL:AY087488 | EMBL:AY142562 |
| ProteinID:BAB02769.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008219 | GO:GO:0009058 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009723 | GO:GO:0009735 |
| GO:GO:0009753 | GO:GO:0009873 | GO:GO:0009987 | GO:GO:0010286 | GO:GO:0016020 | GO:GO:0043565 |
| GO:GO:0045893 | GO:GO:0051707 | InterPro:IPR001471 | InterPro:IPR036955 | RefSeq:NP_188299.1 | UniProt:P42736 |
| PFAM:PF00847 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | Symbol:RAP2.3 |
| SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI0000125BC4 | EMBL:Y09942 | EMBL:Z37504 | SEG:seg |
Description
RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
Coordinates
chr3:+:5705541..5707084
Molecular Weight (calculated)
27759.4 Da
IEP (calculated)
4.944
GRAVY (calculated)
-0.727
Length
248 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.