Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021200.1-P | Field mustard | nucleus | 99.59 | 98.77 |
| CDY28337 | Canola | nucleus | 97.93 | 97.12 |
| CDX82392 | Canola | nucleus | 82.57 | 81.22 |
| CDX95906 | Canola | nucleus | 82.16 | 81.15 |
| AT3G16770.1 | Thale cress | nucleus | 83.4 | 81.05 |
| CDY54628 | Canola | nucleus | 81.33 | 80.0 |
| CDX92094 | Canola | nucleus | 77.59 | 77.27 |
| KRH12100 | Soybean | nucleus | 44.81 | 48.43 |
| KRH37061 | Soybean | nucleus | 45.23 | 45.99 |
| VIT_05s0077g01860.t01 | Wine grape | nucleus | 46.89 | 43.63 |
| Solyc01g065980.2.1 | Tomato | nucleus | 43.15 | 40.94 |
| PGSC0003DMT400043311 | Potato | nucleus | 42.32 | 38.64 |
| CDY27480 | Canola | nucleus | 29.46 | 36.79 |
| CDY51428 | Canola | nucleus | 29.46 | 36.22 |
| CDX72909 | Canola | nucleus | 26.97 | 34.57 |
| CDY37698 | Canola | mitochondrion | 21.99 | 31.36 |
| CDX68269 | Canola | nucleus | 28.63 | 31.22 |
| CDY50643 | Canola | nucleus | 28.22 | 29.96 |
| CDY53788 | Canola | golgi | 21.99 | 27.04 |
| CDX96402 | Canola | nucleus | 27.8 | 26.8 |
| CDX69647 | Canola | nucleus | 22.41 | 24.88 |
| CDY09787 | Canola | nucleus | 22.41 | 24.22 |
| CDY27952 | Canola | nucleus | 21.58 | 24.07 |
| CDY17191 | Canola | nucleus | 21.58 | 24.07 |
| CDX82492 | Canola | nucleus | 33.61 | 23.01 |
| CDX75756 | Canola | nucleus | 33.2 | 22.99 |
| CDY02492 | Canola | nucleus | 29.05 | 22.88 |
| CDY25681 | Canola | nucleus | 29.05 | 22.8 |
| CDY45310 | Canola | nucleus | 24.07 | 22.22 |
| CDX98435 | Canola | nucleus | 34.44 | 21.9 |
| CDX78517 | Canola | nucleus | 23.24 | 21.71 |
| CDX85656 | Canola | nucleus | 22.41 | 21.69 |
| CDY65334 | Canola | nucleus | 34.44 | 21.67 |
| CDY55173 | Canola | nucleus | 22.82 | 21.57 |
| CDY39107 | Canola | nucleus | 34.85 | 21.54 |
| CDX75430 | Canola | nucleus | 23.24 | 21.37 |
| CDX70498 | Canola | nucleus | 22.82 | 21.32 |
| CDX72481 | Canola | nucleus | 22.82 | 21.32 |
| CDX91131 | Canola | nucleus | 22.41 | 21.26 |
| CDX69054 | Canola | nucleus | 23.24 | 21.21 |
| CDX70027 | Canola | nucleus | 21.99 | 20.95 |
| CDX98982 | Canola | nucleus | 21.99 | 20.95 |
| CDY53152 | Canola | nucleus | 19.5 | 20.8 |
| CDX76278 | Canola | nucleus | 22.82 | 20.75 |
| CDY14051 | Canola | nucleus | 21.99 | 20.7 |
| CDY46253 | Canola | nucleus | 22.41 | 20.69 |
| CDX78288 | Canola | nucleus | 21.58 | 20.39 |
| CDX69056 | Canola | nucleus | 17.01 | 20.1 |
| CDX97559 | Canola | nucleus | 34.85 | 19.67 |
| CDY31304 | Canola | nucleus | 26.56 | 16.8 |
| CDY46821 | Canola | nucleus | 26.56 | 16.75 |
| CDY14506 | Canola | nucleus | 26.56 | 16.33 |
| CDY08853 | Canola | nucleus | 26.56 | 16.2 |
| CDX81250 | Canola | nucleus | 24.9 | 14.89 |
| CDY71587 | Canola | cytosol | 0.41 | 1.45 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078HB30 | UniProt:A0A078HB30 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| EnsemblPlants:CDY34977 | ProteinID:CDY34977 | ProteinID:CDY34977.1 | ncoils:Coil | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00057562001 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 |
| SUPFAM:SSF54171 | UniParc:UPI000067A4E5 | SEG:seg | : | : | : |
Description
BnaA01g27570DBnaA01g27570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HB30]
Coordinates
chrLK032344:+:116796..118053
Molecular Weight (calculated)
26919.5 Da
IEP (calculated)
5.235
GRAVY (calculated)
-0.684
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIISDF APNVTKAKGR KLTAEELWSE LDASAADDFW GFHSTSKTQS TNQQVTLKEE AAEKEKEPVT EKRRKRKNVY RGIRKRPWGK WASEIRDPRK
101: GARVWLGTFN TAEEAAMAYD VAAKRIRGDK AKLNFPDLLH HPPRSPATPL ASSPVSEVQP PAKKHCVVSQ SELTQPSFPV ECSGFGSGDE FQLDYDLKQQ
201: ISSLESFLEL DGDTVEQPSQ LDESVSEVDM WMIDDVIASY Q
101: GARVWLGTFN TAEEAAMAYD VAAKRIRGDK AKLNFPDLLH HPPRSPATPL ASSPVSEVQP PAKKHCVVSQ SELTQPSFPV ECSGFGSGDE FQLDYDLKQQ
201: ISSLESFLEL DGDTVEQPSQ LDESVSEVDM WMIDDVIASY Q
001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
Arabidopsis Description
RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.