Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra016063.1-P | Field mustard | nucleus | 86.17 | 64.54 |
| CDX96402 | Canola | nucleus | 85.64 | 64.4 |
| CDX68269 | Canola | nucleus | 68.09 | 57.92 |
| CDY50643 | Canola | nucleus | 68.62 | 56.83 |
| AT1G72360.2 | Thale cress | nucleus | 61.7 | 44.27 |
| CDY27480 | Canola | nucleus | 40.43 | 39.38 |
| CDY51428 | Canola | nucleus | 39.89 | 38.27 |
| CDY37698 | Canola | mitochondrion | 25.0 | 27.81 |
| CDY28337 | Canola | nucleus | 35.11 | 27.16 |
| CDX95906 | Canola | nucleus | 35.11 | 27.05 |
| CDY34977 | Canola | nucleus | 34.57 | 26.97 |
| CDY54628 | Canola | nucleus | 35.11 | 26.94 |
| CDX82392 | Canola | nucleus | 35.11 | 26.94 |
| CDX92094 | Canola | nucleus | 34.04 | 26.45 |
| CDY53788 | Canola | golgi | 25.0 | 23.98 |
| CDY27952 | Canola | nucleus | 26.06 | 22.69 |
| CDY17191 | Canola | nucleus | 26.06 | 22.69 |
| CDX69647 | Canola | nucleus | 25.53 | 22.12 |
| CDY09787 | Canola | nucleus | 25.53 | 21.52 |
| CDX75756 | Canola | nucleus | 37.77 | 20.4 |
| CDX82492 | Canola | nucleus | 37.77 | 20.17 |
| CDY65334 | Canola | nucleus | 40.96 | 20.1 |
| CDY53152 | Canola | nucleus | 23.94 | 19.91 |
| CDY39107 | Canola | nucleus | 40.96 | 19.74 |
| CDY02492 | Canola | nucleus | 31.91 | 19.61 |
| CDY25681 | Canola | nucleus | 31.91 | 19.54 |
| CDX70498 | Canola | nucleus | 26.6 | 19.38 |
| CDX78517 | Canola | nucleus | 26.6 | 19.38 |
| CDX85656 | Canola | nucleus | 25.53 | 19.28 |
| CDY55173 | Canola | nucleus | 26.06 | 19.22 |
| CDX98435 | Canola | nucleus | 38.3 | 19.0 |
| CDX70027 | Canola | nucleus | 25.53 | 18.97 |
| CDX98982 | Canola | nucleus | 25.53 | 18.97 |
| CDX91131 | Canola | nucleus | 25.53 | 18.9 |
| CDY14051 | Canola | nucleus | 25.53 | 18.75 |
| CDX78288 | Canola | nucleus | 25.0 | 18.43 |
| CDX97559 | Canola | nucleus | 39.89 | 17.56 |
| CDX69056 | Canola | nucleus | 18.62 | 17.16 |
| CDY45310 | Canola | nucleus | 23.4 | 16.86 |
| CDX72481 | Canola | nucleus | 22.87 | 16.67 |
| CDX76278 | Canola | nucleus | 23.4 | 16.6 |
| CDY46253 | Canola | nucleus | 22.87 | 16.48 |
| CDX75430 | Canola | nucleus | 22.87 | 16.41 |
| CDX69054 | Canola | nucleus | 22.87 | 16.29 |
| CDY31304 | Canola | nucleus | 29.79 | 14.7 |
| CDY46821 | Canola | nucleus | 29.79 | 14.66 |
| CDY14506 | Canola | nucleus | 29.26 | 14.03 |
| CDY08853 | Canola | nucleus | 29.26 | 13.92 |
| CDX81250 | Canola | nucleus | 28.19 | 13.15 |
| CDY71587 | Canola | cytosol | 1.06 | 2.9 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078C9N5 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX72909 |
| ProteinID:CDX72909 | ProteinID:CDX72909.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00103330001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EF3F00 | SEG:seg | : | : | : | : |
Description
BnaC06g33570D
Coordinates
chrLK031797:+:1085402..1086226
Molecular Weight (calculated)
20869.3 Da
IEP (calculated)
6.026
GRAVY (calculated)
-0.737
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAVISDY INVTAGKPSW RRDDKNKSSS SSEYRGIRRR PWGRWAADIR DPIKGVRVWL GTFNTAEDAA RAYDLEAKRL RGVKAKLNFP NESPASSSRK
101: RKASSPPPTQ RRPQVQKIEE KHEGNDLGGG CSYDCEGDVD GLFSDELLAF ENETECFLQT PFMEGGNCGS LTSLSSLLDE VNVMDLWS
101: RKASSPPPTQ RRPQVQKIEE KHEGNDLGGG CSYDCEGDVD GLFSDELLAF ENETECFLQT PFMEGGNCGS LTSLSSLLDE VNVMDLWS
001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASASDGKKKQ SSRYKGIRRR PWGRWAAEIR DPIKGVRVWL
101: GTFNTAEEAA RAYDLEAKRI RGAKAKLNFP NESSGKRKAK AKTVQQVEEN HEADLDVAVV SSAPSSSCLD FLWEENNPDT LLIDTQWLED IIMGDANKKH
201: EPNDSEEANN VDASLLSEEL LAFENQTEYF SQMPFTEGNC DSSTSLSSLF DGGNDMGLWS
101: GTFNTAEEAA RAYDLEAKRI RGAKAKLNFP NESSGKRKAK AKTVQQVEEN HEADLDVAVV SSAPSSSCLD FLWEENNPDT LLIDTQWLED IIMGDANKKH
201: EPNDSEEANN VDASLLSEEL LAFENQTEYF SQMPFTEGNC DSSTSLSSLF DGGNDMGLWS
Arabidopsis Description
HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.