Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003883.1-P | Field mustard | nucleus | 96.83 | 88.07 |
| CDY50643 | Canola | nucleus | 90.05 | 87.67 |
| CDX72909 | Canola | nucleus | 57.92 | 68.09 |
| CDX96402 | Canola | nucleus | 69.23 | 61.2 |
| AT1G72360.2 | Thale cress | nucleus | 63.8 | 53.82 |
| CDY27480 | Canola | nucleus | 34.39 | 39.38 |
| CDY51428 | Canola | nucleus | 33.94 | 38.27 |
| CDY54628 | Canola | nucleus | 33.03 | 29.8 |
| CDX82392 | Canola | nucleus | 33.03 | 29.8 |
| CDX92094 | Canola | nucleus | 31.67 | 28.93 |
| CDY28337 | Canola | nucleus | 31.67 | 28.81 |
| CDY34977 | Canola | nucleus | 31.22 | 28.63 |
| CDX95906 | Canola | nucleus | 31.22 | 28.28 |
| CDY37698 | Canola | mitochondrion | 21.27 | 27.81 |
| CDY02492 | Canola | nucleus | 34.84 | 25.16 |
| CDY25681 | Canola | nucleus | 34.84 | 25.08 |
| CDX75756 | Canola | nucleus | 38.01 | 24.14 |
| CDY53788 | Canola | golgi | 21.27 | 23.98 |
| CDX82492 | Canola | nucleus | 37.56 | 23.58 |
| CDX98435 | Canola | nucleus | 40.27 | 23.48 |
| CDY65334 | Canola | nucleus | 38.91 | 22.45 |
| CDY39107 | Canola | nucleus | 39.37 | 22.31 |
| CDX69647 | Canola | nucleus | 21.72 | 22.12 |
| CDY09787 | Canola | nucleus | 21.72 | 21.52 |
| CDY17191 | Canola | nucleus | 20.81 | 21.3 |
| CDY27952 | Canola | nucleus | 20.81 | 21.3 |
| CDX97559 | Canola | nucleus | 40.27 | 20.84 |
| CDX78517 | Canola | nucleus | 23.53 | 20.16 |
| CDY53152 | Canola | nucleus | 20.36 | 19.91 |
| CDX70498 | Canola | nucleus | 23.08 | 19.77 |
| CDX85656 | Canola | nucleus | 22.17 | 19.68 |
| CDY55173 | Canola | nucleus | 22.62 | 19.61 |
| CDX91131 | Canola | nucleus | 22.17 | 19.29 |
| CDY14051 | Canola | nucleus | 22.17 | 19.14 |
| CDX98982 | Canola | nucleus | 21.72 | 18.97 |
| CDX70027 | Canola | nucleus | 21.72 | 18.97 |
| CDX78288 | Canola | nucleus | 21.72 | 18.82 |
| CDY45310 | Canola | nucleus | 22.17 | 18.77 |
| CDX72481 | Canola | nucleus | 21.72 | 18.6 |
| CDX69054 | Canola | nucleus | 21.72 | 18.18 |
| CDX76278 | Canola | nucleus | 21.72 | 18.11 |
| CDY46253 | Canola | nucleus | 21.27 | 18.01 |
| CDX75430 | Canola | nucleus | 21.27 | 17.94 |
| CDX69056 | Canola | nucleus | 16.29 | 17.65 |
| CDY31304 | Canola | nucleus | 26.24 | 15.22 |
| CDY46821 | Canola | nucleus | 26.24 | 15.18 |
| CDY14506 | Canola | nucleus | 26.24 | 14.8 |
| CDY08853 | Canola | nucleus | 25.79 | 14.43 |
| CDX81250 | Canola | nucleus | 24.43 | 13.4 |
| CDY71587 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | GO:A0A078BWV8 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | EnsemblPlants:CDX68269 |
| ProteinID:CDX68269 | ProteinID:CDX68269.1 | InterPro:DNA-bd_dom_sf | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00099550001 | InterPro:IPR001471 | InterPro:IPR036955 | PFAM:PF00847 |
| PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF66 | SMART:SM00380 | SUPFAM:SSF54171 |
| UniParc:UPI0004EE8539 | SEG:seg | : | : | : | : |
Description
BnaA07g23090D
Coordinates
chrLK031787:-:4722043..4722795
Molecular Weight (calculated)
24901.9 Da
IEP (calculated)
4.721
GRAVY (calculated)
-0.797
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAVIADY ITPSRSSRSS KSTWRRDNDV VDLTLDDFEG DFDEFEKKKK SSEYRGIRRR PWGRWAAEIR DPIKGVRVWL GTFNTAEDAA RAYDLEAKRI
101: RGAKAKLNFP NESPSRKRKA SSSSSPQPQV KIEEKQEVAV ASSLWEGDTI QVDTQWLEDA IKGGEKEGKR QKGCDGEGDV NALLSEELLA FEKETECFFQ
201: MPFMEGGSSV FEGDDVLDLW S
101: RGAKAKLNFP NESPSRKRKA SSSSSPQPQV KIEEKQEVAV ASSLWEGDTI QVDTQWLEDA IKGGEKEGKR QKGCDGEGDV NALLSEELLA FEKETECFFQ
201: MPFMEGGSSV FEGDDVLDLW S
001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASASDGKKKQ SSRYKGIRRR PWGRWAAEIR DPIKGVRVWL
101: GTFNTAEEAA RAYDLEAKRI RGAKAKLNFP NESSGKRKAK AKTVQQVEEN HEADLDVAVV SSAPSSSCLD FLWEENNPDT LLIDTQWLED IIMGDANKKH
201: EPNDSEEANN VDASLLSEEL LAFENQTEYF SQMPFTEGNC DSSTSLSSLF DGGNDMGLWS
101: GTFNTAEEAA RAYDLEAKRI RGAKAKLNFP NESSGKRKAK AKTVQQVEEN HEADLDVAVV SSAPSSSCLD FLWEENNPDT LLIDTQWLED IIMGDANKKH
201: EPNDSEEANN VDASLLSEEL LAFENQTEYF SQMPFTEGNC DSSTSLSSLF DGGNDMGLWS
Arabidopsis Description
HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.