Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16770.1 | KRH22291 | AT2G42580.1 | 19000166 |
| AT3G16770.1 | KRH27037 | AT2G42580.1 | 19000166 |
| AT3G16770.1 | KRH53542 | AT4G27780.1 | 15159625 |
| AT3G16770.1 | KRH64393 | AT4G27780.1 | 15159625 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH12100 | Soybean | nucleus | 81.86 | 87.0 |
| CDY34977 | Canola | nucleus | 45.99 | 45.23 |
| Bra021200.1-P | Field mustard | nucleus | 45.99 | 44.86 |
| CDY28337 | Canola | nucleus | 45.57 | 44.44 |
| CDY54628 | Canola | nucleus | 45.57 | 44.08 |
| VIT_05s0077g01860.t01 | Wine grape | nucleus | 48.1 | 44.02 |
| CDX95906 | Canola | nucleus | 45.15 | 43.85 |
| CDX92094 | Canola | nucleus | 44.73 | 43.8 |
| Bra022176.1-P | Field mustard | nucleus | 44.73 | 43.8 |
| AT3G16770.1 | Thale cress | nucleus | 45.57 | 43.55 |
| Bra001640.1-P | Field mustard | nucleus | 44.73 | 43.27 |
| CDX82392 | Canola | nucleus | 44.73 | 43.27 |
| Solyc01g065980.2.1 | Tomato | nucleus | 39.66 | 37.01 |
| KRH59733 | Soybean | cytosol, mitochondrion, nucleus | 18.99 | 36.89 |
| KRG96472 | Soybean | mitochondrion | 33.76 | 36.2 |
| PGSC0003DMT400043311 | Potato | nucleus | 39.66 | 35.61 |
| KRH69270 | Soybean | nucleus | 38.4 | 30.33 |
| KRH31850 | Soybean | nucleus | 37.13 | 28.95 |
| TraesCS1A01G231200.1 | Wheat | nucleus | 21.1 | 27.78 |
| HORVU1Hr1G058940.4 | Barley | nucleus, plastid | 21.52 | 27.42 |
| TraesCS1D01G230900.1 | Wheat | nucleus | 21.1 | 27.17 |
| KRG97290 | Soybean | nucleus | 34.18 | 27.09 |
| Zm00001d037941_P001 | Maize | nucleus | 21.52 | 26.42 |
| GSMUA_Achr3P08180_001 | Banana | nucleus | 21.94 | 26.4 |
| KRH69017 | Soybean | nucleus | 38.4 | 26.38 |
| KRH63877 | Soybean | nucleus | 22.36 | 26.37 |
| TraesCS1B01G243200.1 | Wheat | nucleus | 20.25 | 25.95 |
| Os05t0361700-01 | Rice | nucleus | 21.1 | 25.25 |
| EES18078 | Sorghum | nucleus | 20.68 | 24.62 |
| KRH06265 | Soybean | nucleus | 39.24 | 24.35 |
| KRH70063 | Soybean | nucleus | 22.78 | 23.68 |
| KRH50274 | Soybean | nucleus | 22.78 | 23.48 |
| GSMUA_Achr8P22500_001 | Banana | nucleus | 24.05 | 23.17 |
| KRH47694 | Soybean | nucleus | 37.55 | 22.7 |
| KRH08410 | Soybean | nucleus | 22.36 | 22.18 |
| KRH71142 | Soybean | nucleus | 19.83 | 21.86 |
| KRH63879 | Soybean | nucleus | 23.63 | 21.37 |
| KRH54084 | Soybean | nucleus | 23.63 | 20.82 |
| KRH06816 | Soybean | nucleus | 22.78 | 20.77 |
| KRH01504 | Soybean | nucleus | 20.68 | 20.25 |
| KRH35113 | Soybean | nucleus, plastid | 23.21 | 20.15 |
| KRH64120 | Soybean | nucleus | 23.21 | 19.57 |
| KRG91682 | Soybean | nucleus | 22.36 | 19.0 |
| KRH45195 | Soybean | nucleus | 20.68 | 17.69 |
| KRH43369 | Soybean | nucleus | 21.94 | 17.57 |
| KRH53825 | Soybean | nucleus | 23.21 | 17.08 |
| KRG94719 | Soybean | nucleus | 23.63 | 16.42 |
| KRH59504 | Soybean | nucleus | 22.36 | 15.36 |
| KRH08660 | Soybean | nucleus | 25.74 | 13.47 |
| KRH70269 | Soybean | nucleus | 25.32 | 12.12 |
Protein Annotations
| EntrezGene:100817253 | MapMan:15.5.7.1 | Gene3D:3.30.730.10 | EMBL:ACUP02005410 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf |
| InterPro:DNA-bd_dom_sf | EnsemblPlantsGene:GLYMA_09G041500 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| UniProt:H2D4C3 | InterPro:IPR001471 | InterPro:IPR036955 | EMBL:JN416600 | EnsemblPlants:KRH37061 | ProteinID:KRH37061 |
| ProteinID:KRH37061.1 | EMBL:KT031082 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 |
| PANTHER:PTHR31190:SF66 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI000189DAC3 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr9:-:3488104..3490538
Molecular Weight (calculated)
26087.7 Da
IEP (calculated)
7.441
GRAVY (calculated)
-0.618
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAIISDF IGVKRGRNLA AQELWSELDP FSDFLGFDTT NSKNQPPLQK IPDKKVVSSC EKKKKSVVGA EKKKSDSGRA RKNVYRGIRQ RPWGKWAAEI
101: RDPHKGVRVW LGTFPTAEEA AQAYDDAAIR IRGDKAKLNF PATTISAAAA PPPSKKQRCL SPDIITEESS SSSSHSTTGS TGESGGGNDE LDLKQIEWFL
201: GLENELPVSN NIGAEWDNMD DLWMLDDVVV PNRHLIY
101: RDPHKGVRVW LGTFPTAEEA AQAYDDAAIR IRGDKAKLNF PATTISAAAA PPPSKKQRCL SPDIITEESS SSSSHSTTGS TGESGGGNDE LDLKQIEWFL
201: GLENELPVSN NIGAEWDNMD DLWMLDDVVV PNRHLIY
001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE
Arabidopsis Description
RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.