CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31850	Soybean	nucleus	92.33	91.12
KRG96472	Soybean	mitochondrion	49.0	66.52
Solyc09g075420.2.1	Tomato	nucleus	46.0	53.08
GSMUA_Achr11P...	Banana	nucleus	35.0	52.76
VIT_07s0005g00820.t01	Wine grape	nucleus	45.33	52.51
PGSC0003DMT400081322	Potato	nucleus	48.0	51.8
GSMUA_AchrUn_...	Banana	nucleus	37.0	51.39
GSMUA_Achr3P08170_001	Banana	nucleus	30.67	50.0
GSMUA_AchrUn_...	Banana	nucleus	32.33	41.45
KRH12100	Soybean	nucleus	30.33	40.81
KRH37061	Soybean	nucleus	30.33	38.4
KRH59733	Soybean	cytosol, mitochondrion, nucleus	14.33	35.25
KRG97290	Soybean	nucleus	34.67	34.78
KRH69017	Soybean	nucleus	39.0	33.91
KRH06265	Soybean	nucleus	39.0	30.63
KRH47694	Soybean	nucleus	37.67	28.83
KRH63877	Soybean	nucleus	18.0	26.87
KRH70063	Soybean	nucleus	18.33	24.12
KRH50274	Soybean	nucleus	18.33	23.91
KRH08410	Soybean	nucleus	18.0	22.59
KRH35113	Soybean	nucleus, plastid	20.0	21.98
KRH71142	Soybean	nucleus	15.67	21.86
KRG91682	Soybean	nucleus	20.0	21.51
KRH63879	Soybean	nucleus	18.67	21.37
KRH54084	Soybean	nucleus	19.0	21.19
KRH06816	Soybean	nucleus	18.0	20.77
KRH01504	Soybean	nucleus	16.33	20.25
KRH64120	Soybean	nucleus	18.67	19.93
KRH43369	Soybean	nucleus	18.33	18.58
KRH45195	Soybean	nucleus	16.0	17.33
KRH53825	Soybean	nucleus	18.33	17.08
KRG94719	Soybean	nucleus	18.67	16.42
KRH59504	Soybean	nucleus	18.67	16.23
KRH08660	Soybean	nucleus	20.0	13.24
KRH70269	Soybean	nucleus	20.33	12.32

Protein Annotations

EntrezGene:100819416	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:ACUP02000698	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
ncoils:Coil	UniProt:D9ICY5	InterPro:DNA-bd_dom_sf	EnsemblPlantsGene:GLYMA_02G016100	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	EMBL:HM134801	InterPro:IPR001471	InterPro:IPR036955	EnsemblPlants:KRH69270
ProteinID:KRH69270	ProteinID:KRH69270.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190
PANTHER:PTHR31190:SF77	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000067A4E3	SEG:seg	:

Description

hypothetical protein

Coordinates

chr2:-:1443606..1445191

Molecular Weight (calculated)

34094.6 Da

IEP (calculated)

5.159

GRAVY (calculated)

-0.858

Length

300 amino acids

Sequence
(BLAST)

001: MCGGAIIADF IPRRGGRRLT ASELWPNSFA KDDDFDLDYS HIATQQPSTL KRSQPPKVSE QVENKPVKRQ RKNLYRGIRQ RPWGKWAAEI RDPRKGVRVW
101: LGTFNTAEEA ARAYDREARK IRGKKAKVNF PNEDDEYSIQ ARNPIPPLPF APQHPPLYQQ QYRCDLNNAP KNLNFEFGYD LNHAEAFPSR VDAVNADSVV
201: VSVDENSGSA SGSEGAYSTT EFMGSVQNGN GYLGGTVMEK KEKETEVIEA EEEKNKVLEL SEELMAYENY MKFYQIPYYD GQSTTNNVQE SLVGDLWSFD

Best Arabidopsis Sequence Match ( AT3G16770.1 )
(BLAST)

001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE

Arabidopsis Description

RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.