Factsheet for PGSC0003DMT400043311

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400047661

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16770.1	PGSC0003DMT400047661	AT4G27780.1	15159625

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g065980.2.1	Tomato	nucleus	89.39	92.91
VIT_05s0077g01860.t01	Wine grape	nucleus	44.7	45.56
KRH12100	Soybean	nucleus	37.5	44.39
CDY34977	Canola	nucleus	38.64	42.32
AT3G16770.1	Thale cress	nucleus	39.39	41.94
CDX95906	Canola	nucleus	38.64	41.8
Bra021200.1-P	Field mustard	nucleus	38.26	41.56
Bra022176.1-P	Field mustard	nucleus	37.88	41.32
CDX92094	Canola	nucleus	37.88	41.32
CDY28337	Canola	nucleus	37.88	41.15
Bra001640.1-P	Field mustard	nucleus	37.12	40.0
CDX82392	Canola	nucleus	37.12	40.0
KRH37061	Soybean	nucleus	35.61	39.66
CDY54628	Canola	nucleus	36.74	39.59
PGSC0003DMT400021312	Potato	nucleus, plastid	19.32	33.12
PGSC0003DMT400081322	Potato	nucleus	31.06	29.5
HORVU1Hr1G058940.4	Barley	nucleus, plastid	20.45	29.03
TraesCS1A01G231200.1	Wheat	nucleus	19.7	28.89
GSMUA_Achr3P08180_001	Banana	nucleus	21.21	28.43
TraesCS1D01G230900.1	Wheat	nucleus	19.7	28.26
Zm00001d037941_P001	Maize	nucleus	20.45	27.98
PGSC0003DMT400011537	Potato	mitochondrion, nucleus	19.7	27.81
TraesCS1B01G243200.1	Wheat	nucleus	18.56	26.49
PGSC0003DMT400021311	Potato	nucleus	15.53	26.45
Os05t0361700-01	Rice	nucleus	19.7	26.26
EES18078	Sorghum	nucleus	19.7	26.13
PGSC0003DMT400010296	Potato	nucleus	18.94	24.63
PGSC0003DMT400010297	Potato	nucleus	18.56	24.62
PGSC0003DMT400012547	Potato	nucleus	33.33	23.66
GSMUA_Achr8P22500_001	Banana	nucleus	21.97	23.58
PGSC0003DMT400065732	Potato	nucleus	19.7	22.61
PGSC0003DMT400023609	Potato	nucleus	32.58	22.05
PGSC0003DMT400074248	Potato	nucleus	32.2	21.91
PGSC0003DMT400036934	Potato	nucleus	21.21	20.29
PGSC0003DMT400066343	Potato	nucleus	20.83	18.64
PGSC0003DMT400060659	Potato	nucleus	21.59	16.81
PGSC0003DMT400048407	Potato	nucleus	23.86	15.95
PGSC0003DMT400050718	Potato	nucleus	22.73	15.15
PGSC0003DMT400016306	Potato	nucleus	22.35	13.38

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:AB085820	ProteinID:ADD82935	ProteinID:ADD82935.1	InterPro:AP2/ERF_dom
InterPro:AP2/ERF_dom_sf	ProteinID:BAC56862	ProteinID:BAC56862.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005886	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008219	GO:GO:0009058	GO:GO:0009605
GO:GO:0009607	GO:GO:0009628	GO:GO:0009719	GO:GO:0009723	GO:GO:0009735	GO:GO:0009753
GO:GO:0009987	GO:GO:0010286	GO:GO:0016020	GO:GO:0043565	GO:GO:0045893	GO:GO:0051707
EMBL:GU587742	InterPro:IPR001471	InterPro:IPR036955	UniProt:M1BEF0	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400016812
PGSC:PGSC0003DMG400016812	EnsemblPlants:PGSC0003DMT400043311	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF66
SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294E660	SEG:seg	:	:

Description

AP2/ERF-domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016812]

Coordinates

chr1:+:10631176..10633828

Molecular Weight (calculated)

29448.3 Da

IEP (calculated)

6.554

GRAVY (calculated)

-0.760

Length

264 amino acids

Sequence
(BLAST)

001: MCGGAIISDY EPAGNFYRKL SARDLWAEFD PISDYWSSSS SPSTVGKPYS AQSPVTHSVD KPKKSDSGKS NQLKKGNKTV KVEKEKSSGP RLRKNKYRGI
101: RQRPWGKWAA EIRDPQKGVR VWLGTFNTAE DAARAYDEAA KRIRGDKAKL NFPVPSPPAK RQCTSTVAAD PPPALLLESS NIISDNNSPL MNFGYDVQSQ
201: TPYYPMEMPV ASDDYELKEQ ISNLESFLEL EPADSSDQFS GIVDSDPLNV FLMEDFASTQ HQFY

Best Arabidopsis Sequence Match ( AT3G16770.1 )
(BLAST)

001: MCGGAIISDY APLVTKAKGR KLTAEELWSE LDASAADDFW GFYSTSKLHP TNQVNVKEEA VKKEQATEPG KRRKRKNVYR GIRKRPWGKW AAEIRDPRKG
101: VRVWLGTFNT AEEAAMAYDV AAKQIRGDKA KLNFPDLHHP PPPNYTPPPS SPRSTDQPPA KKVCVVSQSE SELSQPSFPV ECIGFGNGDE FQNLSYGFEP
201: DYDLKQQISS LESFLELDGN TAEQPSQLDE SVSEVDMWML DDVIASYE

Arabidopsis Description

RAP2-3Ethylene-responsive transcription factor RAP2-3 [Source:UniProtKB/Swiss-Prot;Acc:P42736]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.