Factsheet for PGSC0003DMT400016306

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g071770.2.1	Tomato	nucleus	93.42	91.15
PGSC0003DMT400048407	Potato	nucleus	54.65	61.01
VIT_18s0072g00260.t01	Wine grape	nucleus	41.5	38.69
PGSC0003DMT400021312	Potato	nucleus, plastid	12.47	35.71
PGSC0003DMT400021311	Potato	nucleus	12.47	35.48
PGSC0003DMT400011537	Potato	mitochondrion, nucleus	13.38	31.55
PGSC0003DMT400010297	Potato	nucleus	13.38	29.65
PGSC0003DMT400065732	Potato	nucleus	15.42	29.57
PGSC0003DMT400010296	Potato	nucleus	13.38	29.06
PGSC0003DMT400036934	Potato	nucleus	18.14	28.99
GSMUA_Achr10P...	Banana	nucleus	18.37	27.55
PGSC0003DMT400060659	Potato	nucleus	21.09	27.43
PGSC0003DMT400050718	Potato	nucleus	24.26	27.02
PGSC0003DMT400066343	Potato	nucleus	17.69	26.44
PGSC0003DMT400043311	Potato	nucleus	13.38	22.35
PGSC0003DMT400081322	Potato	nucleus	12.7	20.14
PGSC0003DMT400012547	Potato	nucleus	15.42	18.28
PGSC0003DMT400023609	Potato	nucleus	14.06	15.9
PGSC0003DMT400074248	Potato	nucleus	13.38	15.21

Protein Annotations

EntrezGene:102585456	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1A7F4	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400006369	PGSC:PGSC0003DMG400006369	EnsemblPlants:PGSC0003DMT400016306	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF59	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295F1B6
RefSeq:XP_006363442.1	SEG:seg	:	:	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400006369]

Coordinates

chr4:+:60610154..60612270

Molecular Weight (calculated)

48257.0 Da

IEP (calculated)

6.359

GRAVY (calculated)

-0.834

Length

441 amino acids

Sequence
(BLAST)

001: MWLLKVANQG DSGEHDRNLS TAGDSETTTN EGIPQPYEQS QSFEEMLQQQ IQQETEYLMS ESANPMYTGY SQSRDMSEMV TALTHVVSGR REGEWGYRPD
101: ISGVTTSFVG GGGGSGSIYS ANSPSSSSSG SWAGQKRRRD QEESVTGERG YGGIREFKNG EPSSSVKPEE DTSLAAPQTS SVSTTAAQTP PQPAEVTGEE
201: TGERKRRYRG VRQRPWGKWA AEIRDPHKAA RVWLGTFDTA EAAAKAYDDA ALRFRGNRAK LNFPENVRLL PQQQPTTRLA ISTTAPAPAA SRFQLMSAAS
301: MRSPSPFFQS HNQPPHQPQQ QQLFQSSDMA RDYWEYSQLL QNPIDFHGGQ QSSSLLEQML LASSLGVLHS HTFPSSSSSS LATSAASSTT SPAYPLFYSA
401: QQSRFFQPQT HQNQSNSSSS SSSNFPPPFW TSSGHYPPSS S

Best Arabidopsis Sequence Match ( AT5G50080.2 )
(BLAST)

001: MSAMVSALTQ VVSARSQTEA EGAHSQTEAE GAHSSSSSAG HKRGWLGIDS APIPSSFARV DSSHNPIEES MSKAFPEEAR EKKRRYRGVR QRPWGKWAAE
101: IRDPHRAARV WLGTFDTAEA AARAYDEAAL RFRGNKAKLN FPEDVRILPP PPPLLRSPAD TVANKAEEDL INYWSYTKLL QSSGQRSFLE RGQEESSNIF
201: EHSPMEQPLP PSSSGPSSSN FPAPSLPNT

Arabidopsis Description

ERF110Ethylene response factor 110 [Source:UniProtKB/TrEMBL;Acc:G8IQH2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.