Factsheet for PGSC0003DMT400060659

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g012050.2.1	Tomato	nucleus	86.14	73.37
PGSC0003DMT400021311	Potato	nucleus	16.52	36.13
PGSC0003DMT400021312	Potato	nucleus, plastid	15.34	33.77
PGSC0003DMT400011537	Potato	mitochondrion, nucleus	18.29	33.16
PGSC0003DMT400010296	Potato	nucleus	18.29	30.54
PGSC0003DMT400010297	Potato	nucleus	17.4	29.65
PGSC0003DMT400065732	Potato	nucleus	20.06	29.57
PGSC0003DMT400036934	Potato	nucleus	21.83	26.81
PGSC0003DMT400050718	Potato	nucleus	28.61	24.49
PGSC0003DMT400066343	Potato	nucleus	19.17	22.03
PGSC0003DMT400043311	Potato	nucleus	16.81	21.59
PGSC0003DMT400048407	Potato	nucleus	25.07	21.52
PGSC0003DMT400016306	Potato	nucleus	27.43	21.09
PGSC0003DMT400081322	Potato	nucleus	16.22	19.78
PGSC0003DMT400012547	Potato	nucleus	18.88	17.2
PGSC0003DMT400023609	Potato	nucleus	18.88	16.41
PGSC0003DMT400074248	Potato	nucleus	18.29	15.98

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M1C682
PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400023593	PGSC:PGSC0003DMG400023593	EnsemblPlants:PGSC0003DMT400060659	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000294C406	SEG:seg

Description

AP2 domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400023593]

Coordinates

chr4:-:7906936..7909082

Molecular Weight (calculated)

37552.1 Da

IEP (calculated)

9.163

GRAVY (calculated)

-0.726

Length

339 amino acids

Sequence
(BLAST)

001: MSVMVSALTR VITGEDRILN QENNNNIIGS SSLNEFSGGV GEKRGREEQQ YFLSDIISSS TGGEVNRTIA SNTPTTEATF IYTTPTYDHN NNNTNVIDYN
101: QPRRRYRGVR QRPWGKWAAE IRDPYKAARV WLGTFDTAED AARAYDETAL KFRGSKAKLN FPENVRLLPT SSIPRQGFSM EKQSPASTFP TNSVENNMVF
201: STEKQFMTGT FPTNSMENVP VSSIISPNTS PNTLSTISFS PNSNPIVHAQ SSNRNSNMNP QYFLNDDFQR GHSSLSLLNQ SMLSTRFQYS SSPSSSSTSR
301: VPVVPSMYFS GSQPTSQSSE SDFRATSSDS AHHPSSSSR

Best Arabidopsis Sequence Match ( AT5G64750.1 )
(BLAST)

001: MCVLKVANQE DNVGKKAESI RDDDHRTLSE IDQWLYLFAA EDDHHRHSFP TQQPPPSSSS SSLISGFSRE MEMSAIVSAL THVVAGNVPQ HQQGGGEGSG
101: EGTSNSSSSS GQKRRREVEE GGAKAVKAAN TLTVDQYFSG GSSTSKVREA SSNMSGPGPT YEYTTTATAS SETSSFSGDQ PRRRYRGVRQ RPWGKWAAEI
201: RDPFKAARVW LGTFDNAESA ARAYDEAALR FRGNKAKLNF PENVKLVRPA STEAQPVHQT AAQRPTQSRN SGSTTTLLPI RPASNQSVHS QPLMQSYNLS
301: YSEMARQQQQ FQQHHQQSLD LYDQMSFPLR FGHTGGSMMQ STSSSSSHSR PLFSPAAVQP PPESASETGY LQDIQWPSDK TSNNYNNSPS S

Arabidopsis Description

ABR1Ethylene-responsive transcription factor ABR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.