Factsheet for PGSC0003DMT400048407

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g056590.1.1	Tomato	nucleus	69.37	88.39
PGSC0003DMT400016306	Potato	nucleus	61.01	54.65
PGSC0003DMT400021312	Potato	nucleus, plastid	15.44	39.61
PGSC0003DMT400021311	Potato	nucleus	15.19	38.71
AT5G50080.2	Thale cress	nucleus	21.52	37.12
PGSC0003DMT400011537	Potato	mitochondrion, nucleus	15.44	32.62
KRH08660	Soybean	nucleus	36.96	32.23
PGSC0003DMT400010297	Potato	nucleus	15.95	31.66
PGSC0003DMT400010296	Potato	nucleus	15.95	31.03
KRH70269	Soybean	nucleus	38.23	30.51
PGSC0003DMT400036934	Potato	nucleus	20.76	29.71
PGSC0003DMT400065732	Potato	nucleus	17.22	29.57
GSMUA_Achr10P...	Banana	nucleus	21.27	28.57
PGSC0003DMT400050718	Potato	nucleus	28.1	28.03
PGSC0003DMT400066343	Potato	nucleus	19.49	26.1
PGSC0003DMT400060659	Potato	nucleus	21.52	25.07
PGSC0003DMT400043311	Potato	nucleus	15.95	23.86
PGSC0003DMT400081322	Potato	nucleus	14.94	21.22
PGSC0003DMT400012547	Potato	nucleus	16.71	17.74
PGSC0003DMT400023609	Potato	nucleus	15.19	15.38
PGSC0003DMT400074248	Potato	nucleus	14.43	14.69

Protein Annotations

EntrezGene:102604476	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1BME2	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400018803	PGSC:PGSC0003DMG400018803	EnsemblPlants:PGSC0003DMT400048407	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF59	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295182B
RefSeq:XP_006361609.1	SEG:seg	:	:	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400018803]

Coordinates

chr3:-:37559007..37561216

Molecular Weight (calculated)

42869.8 Da

IEP (calculated)

5.447

GRAVY (calculated)

-0.650

Length

395 amino acids

Sequence
(BLAST)

001: MCFSKVANPR KSSEYVRFTD TEDTQTTAAP AAAGSVGGGQ FDQFLEEDDY SMYTEYSDSQ TRDMSEMVTA LTHVVSGQDY RPDTSGVGVG VGGGERYYSL
101: NSPSSAYSSS SSGSRAGLKR SRDQEEFRSG LSSSSSVKIE GTTSMVAPSN TTISTITTIP AFTTTTTTTT TTGEGSSEET GGGDRRRKYR GVRQRPWGKW
201: AAEIRDPHKA ARVWLGTFDT AEAAARAYDE AALRFRGNRA KLNFPENARL SLPQIQNTTI STISNPSHQF MAPVTQPTPF FNPMQSSDTT RDYWEYSQLL
301: QNPGDFSDQQ PSNLLEQMFV ASSMAMLHSN TLPSISSSSS LATSAASSTS FPLLFSSYYR PQANQIQGTN TSTNSSSSFS APFWNSSTQY PPSSS

Best Arabidopsis Sequence Match ( AT5G61890.1 )
(BLAST)

001: MYGKRPFGGD ESEEREEDEN LFPVFSARSQ HDMRVMVSAL TQVIGNQQSK SHDNISSIDD NYPSVYNPQD PNQQVAPTHQ DQGDLRRRHY RGVRQRPWGK
101: WAAEIRDPKK AARVWLGTFE TAESAALAYD EAALKFKGSK AKLNFPERVQ LGSNSTYYSS NQIPQMEPQS IPNYNQYYHD ASSGDMLSFN LGGGYGSGTG
201: YSMSHDNSTT TAATTSSSSG GSSRQQEEQD YARFWRFGDS SSSPHSGY

Arabidopsis Description

ERF114Ethylene-responsive transcription factor ERF114 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH54]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.