Factsheet for PGSC0003DMT400050718

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g051360.2.1	Tomato	nucleus	64.14	83.83
PGSC0003DMT400021311	Potato	nucleus	14.39	36.77
PGSC0003DMT400011537	Potato	mitochondrion, nucleus	16.67	35.29
PGSC0003DMT400021312	Potato	nucleus, plastid	13.38	34.42
VIT_07s0031g01980.t01	Wine grape	nucleus	30.56	34.38
GSMUA_Achr6P18020_001	Banana	nucleus	22.22	33.21
PGSC0003DMT400010297	Potato	nucleus	16.41	32.66
KRH64120	Soybean	nucleus	22.98	32.38
PGSC0003DMT400010296	Potato	nucleus	16.41	32.02
KRH53825	Soybean	nucleus	25.0	30.75
PGSC0003DMT400065732	Potato	nucleus	17.68	30.43
PGSC0003DMT400036934	Potato	nucleus	21.21	30.43
HORVU5Hr1G036590.2	Barley	nucleus	23.99	30.25
Bra031903.1-P	Field mustard	nucleus	28.54	29.82
CDY31304	Canola	nucleus	28.54	29.66
TraesCS5D01G129400.1	Wheat	nucleus	23.99	29.05
TraesCS5A01G112600.1	Wheat	nucleus	23.99	28.96
AT5G64750.1	Thale cress	nucleus	28.54	28.9
Bra024325.1-P	Field mustard	nucleus	28.79	28.86
CDY46821	Canola	nucleus	27.78	28.8
PGSC0003DMT400060659	Potato	nucleus	24.49	28.61
CDY14506	Canola	nucleus	28.28	28.57
CDY08853	Canola	nucleus	28.28	28.35
PGSC0003DMT400048407	Potato	nucleus	28.03	28.1
Bra037794.1-P	Field mustard	nucleus	26.77	27.82
Zm00001d053195_P002	Maize	nucleus	22.73	27.36
KRH43369	Soybean	nucleus	20.2	27.03
TraesCS5B01G118200.1	Wheat	nucleus	23.23	26.98
CDX81250	Canola	nucleus	27.02	26.55
KRH59504	Soybean	nucleus	22.22	25.51
OQU82952	Sorghum	mitochondrion	20.45	24.62
OQU78803	Sorghum	nucleus	20.96	24.34
PGSC0003DMT400016306	Potato	nucleus	27.02	24.26
PGSC0003DMT400066343	Potato	nucleus	17.68	23.73
Zm00001d023535_P001	Maize	nucleus	24.75	23.17
PGSC0003DMT400043311	Potato	nucleus	15.15	22.73
Os12t0168100-01	Rice	nucleus	18.43	21.41
PGSC0003DMT400081322	Potato	nucleus	14.9	21.22
PGSC0003DMT400012547	Potato	nucleus	17.68	18.82
PGSC0003DMT400074248	Potato	nucleus	16.67	17.01
PGSC0003DMT400023609	Potato	nucleus	16.67	16.92

Protein Annotations

EntrezGene:102602417	MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
UniProt:M1BQQ2	PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400019693	PGSC:PGSC0003DMG400019693	EnsemblPlants:PGSC0003DMT400050718	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF59	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002949E5D
RefSeq:XP_006357342.1	SEG:seg	:	:	:	:

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400019693]

Coordinates

chr4:-:55560237..55562248

Molecular Weight (calculated)

44647.1 Da

IEP (calculated)

7.213

GRAVY (calculated)

-0.839

Length

396 amino acids

Sequence
(BLAST)

001: MCNIIHYKVA NSNDNRRRRS TRQDDEQEIN VFDTMFRGNI NREEEMSVMV SALTHVVAGH HPENVENHHQ NNTSSSRGVG EKRGRDEEQL LLLHGTNSSH
101: MTLSSGGEGT SIRPITSSTP TTEATFIYTT STNNVHQNSS TIDQSNNTND NQLRRRYRGV RQRPWGKWAA EIRDPYKAAR VWLGTFDTAE GAARAYDEAA
201: LRFRGSKAKL NFPENVRLLP SSIQQPPNTL YSVSSEPDPI VHTSSLYHSN FIGHSSRDVE PIVPTSSLDR SSFIIEYSSR DEKPIVHTSS LYRSNFIIGH
301: SSRDVEPIVH TNRSNFTEHS TRDVEPIVQS SSLYRSNFIE RIPRNDPIVY QMVQQGAYFP YFQAGSTSQS TSGSDFHQAT NSSNWSNHDH PSSSSG

Best Arabidopsis Sequence Match ( AT5G64750.1 )
(BLAST)

001: MCVLKVANQE DNVGKKAESI RDDDHRTLSE IDQWLYLFAA EDDHHRHSFP TQQPPPSSSS SSLISGFSRE MEMSAIVSAL THVVAGNVPQ HQQGGGEGSG
101: EGTSNSSSSS GQKRRREVEE GGAKAVKAAN TLTVDQYFSG GSSTSKVREA SSNMSGPGPT YEYTTTATAS SETSSFSGDQ PRRRYRGVRQ RPWGKWAAEI
201: RDPFKAARVW LGTFDNAESA ARAYDEAALR FRGNKAKLNF PENVKLVRPA STEAQPVHQT AAQRPTQSRN SGSTTTLLPI RPASNQSVHS QPLMQSYNLS
301: YSEMARQQQQ FQQHHQQSLD LYDQMSFPLR FGHTGGSMMQ STSSSSSHSR PLFSPAAVQP PPESASETGY LQDIQWPSDK TSNNYNNSPS S

Arabidopsis Description

ABR1Ethylene-responsive transcription factor ABR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.