Factsheet for Os12t0168100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU78803	Sorghum	nucleus	43.7	43.7
Zm00001d053195_P002	Maize	nucleus	38.42	39.82
Os04t0398000-02	Rice	nucleus	27.57	35.07
Zm00001d023535_P001	Maize	nucleus	39.88	32.15
GSMUA_Achr6P18020_001	Banana	nucleus	24.34	31.32
Os05t0361700-01	Rice	nucleus	16.72	28.79
HORVU5Hr1G036590.2	Barley	nucleus	26.39	28.66
TraesCS5D01G129400.1	Wheat	nucleus	27.27	28.44
TraesCS5A01G112600.1	Wheat	nucleus	26.98	28.05
Os08t0474000-01	Rice	nucleus	17.89	27.85
TraesCS5B01G118200.1	Wheat	nucleus	26.39	26.39
Os01t0313300-01	Rice	nucleus	15.84	26.09
Os02t0764700-01	Rice	nucleus	18.48	26.03
KRH64120	Soybean	nucleus	19.35	23.49
Os09t0457900-01	Rice	nucleus	18.18	22.63
Solyc04g051360.2.1	Tomato	nucleus	19.94	22.44
KRH43369	Soybean	nucleus	18.18	20.95
KRH53825	Soybean	nucleus	19.06	20.19
KRH59504	Soybean	nucleus	19.65	19.42
Bra037794.1-P	Field mustard	nucleus	20.82	18.64
Os03t0183000-02	Rice	plastid	18.18	18.56
VIT_07s0031g01980.t01	Wine grape	nucleus	19.06	18.47
PGSC0003DMT400050718	Potato	nucleus	21.41	18.43
Bra031903.1-P	Field mustard	nucleus	20.23	18.21
AT5G64750.1	Thale cress	nucleus	20.82	18.16
CDY31304	Canola	nucleus	20.23	18.11
CDY46821	Canola	nucleus	20.23	18.06
CDX81250	Canola	nucleus	20.53	17.37
CDY14506	Canola	nucleus	19.94	17.35
Os07t0617000-02	Rice	nucleus	17.3	17.25
CDY08853	Canola	nucleus	19.94	17.22
Bra024325.1-P	Field mustard	nucleus	19.94	17.22
Os02t0782700-01	Rice	nucleus	17.01	15.89
Os06t0194000-02	Rice	nucleus	16.42	15.47
Os09t0434500-01	Rice	vacuole	17.3	14.9

Protein Annotations

MapMan:15.5.7.1	MapMan:15.5.7.2	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:BAF29271.1
ProteinID:BAT16045.1	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EnsemblPlantsGene:Os12g0168100	EnsemblPlants:Os12t0168100-01	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF78	UniProt:Q0IPU4	SMART:SM00380	SUPFAM:SSF54171
UniParc:UPI0000DD9DD2	SEG:seg	:	:	:	:

Description

ETHYLENE RESPONSE FACTOR 124Similar to AP2 domain containing protein RAP2.6 (Fragment). (Os12t0168100-01)

Coordinates

chr12:-:3437394..3440088

Molecular Weight (calculated)

37426.7 Da

IEP (calculated)

11.967

GRAVY (calculated)

-1.035

Length

341 amino acids

Sequence
(BLAST)

001: SGPCAVPATR WRDPESSGGG RSTPTPAATR ARWRRRRRRC WRRRCCRGGG RRRRWRRWCR RWRVSWPAAA ARRCRRRGQP RESPRRAPPW RGCGGRTAVS
101: SPPPPPRRRR RLHFRPVRYV PSPGQHSPAS AAAGDEEELP SPSSADSSGG TARKRYRGVR QRPWGKWAAE IRDPHKAARV WLGTFDTAED AARAYDGAAL
201: RFRGSRAKLN FPEHATLPPP PTTTTAAAHR CPPPPRTDAL LESQELSPGA GGGDPYSQYA RFLQGSGGDG GEAAARPGGG ASQRTPPATT LLYSFEGDAA
301: SAACLWQPES GGGGMGWPAT SPAAWLEYGF YPPPERRDTD T

Best Arabidopsis Sequence Match ( AT2G33710.1 )
(BLAST)

001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK

Arabidopsis Description

Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.