Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G129400.1 | Wheat | nucleus | 95.43 | 95.72 |
| TraesCS5B01G118200.1 | Wheat | nucleus | 93.6 | 90.03 |
| HORVU5Hr1G036590.2 | Barley | nucleus | 78.96 | 82.48 |
| TraesCS1A01G231200.1 | Wheat | nucleus | 19.21 | 35.0 |
| TraesCS6A01G319500.1 | Wheat | nucleus | 19.21 | 33.51 |
| GSMUA_Achr6P18020_001 | Banana | nucleus | 26.83 | 33.21 |
| TraesCS7A01G264100.1 | Wheat | plastid | 22.87 | 33.04 |
| TraesCS2A01G288000.1 | Wheat | nucleus | 23.48 | 30.68 |
| Zm00001d053195_P002 | Maize | nucleus | 29.88 | 29.79 |
| TraesCS6A01G319600.1 | Wheat | nucleus | 21.95 | 29.15 |
| TraesCS1A01G370700.1 | Wheat | nucleus | 23.48 | 29.06 |
| OQU78803 | Sorghum | nucleus | 29.88 | 28.74 |
| TraesCS5A01G238400.1 | Wheat | nucleus | 21.04 | 28.63 |
| TraesCS1A01G370600.1 | Wheat | nucleus | 22.26 | 28.52 |
| KRH64120 | Soybean | nucleus | 24.39 | 28.47 |
| Solyc04g051360.2.1 | Tomato | nucleus | 26.22 | 28.38 |
| TraesCS1A01G370400.1 | Wheat | nucleus | 22.26 | 28.08 |
| TraesCS5A01G314600.1 | Wheat | nucleus | 17.07 | 27.45 |
| KRH43369 | Soybean | nucleus | 24.39 | 27.03 |
| Os12t0168100-01 | Rice | nucleus | 28.05 | 26.98 |
| AT5G64750.1 | Thale cress | nucleus | 31.4 | 26.34 |
| Bra037794.1-P | Field mustard | nucleus | 30.18 | 25.98 |
| CDY46821 | Canola | nucleus | 29.88 | 25.65 |
| Bra031903.1-P | Field mustard | nucleus | 29.57 | 25.59 |
| Bra024325.1-P | Field mustard | nucleus | 30.79 | 25.57 |
| Zm00001d023535_P001 | Maize | nucleus | 32.93 | 25.53 |
| CDY14506 | Canola | nucleus | 30.49 | 25.51 |
| CDY31304 | Canola | nucleus | 29.57 | 25.46 |
| CDY08853 | Canola | nucleus | 30.49 | 25.32 |
| VIT_07s0031g01980.t01 | Wine grape | nucleus | 26.83 | 25.0 |
| KRH59504 | Soybean | nucleus | 26.22 | 24.93 |
| KRH53825 | Soybean | nucleus | 24.09 | 24.53 |
| CDX81250 | Canola | nucleus | 29.57 | 24.07 |
| PGSC0003DMT400050718 | Potato | nucleus | 28.96 | 23.99 |
| TraesCS4A01G005600.1 | Wheat | nucleus, plastid | 19.82 | 20.57 |
| TraesCS7A01G377400.1 | Wheat | nucleus | 16.46 | 15.88 |
| TraesCS7A01G158000.1 | Wheat | nucleus | 17.07 | 15.86 |
| TraesCS6A01G097700.1 | Wheat | nucleus | 17.07 | 15.47 |
| TraesCS5A01G215900.1 | Wheat | nucleus | 17.38 | 15.12 |
| TraesCS6A01G097500.1 | Wheat | nucleus | 16.77 | 15.11 |
| TraesCS6A01G343300.1 | Wheat | nucleus | 17.99 | 14.82 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006950 | GO:GO:0006970 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009628 | GO:GO:0009719 | GO:GO:0009737 |
| GO:GO:0009749 | GO:GO:0009788 | GO:GO:0009987 | GO:GO:0050832 | GO:GO:1902074 | InterPro:IPR001471 |
| InterPro:IPR036955 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS5A01G112600 | EnsemblPlants:TraesCS5A01G112600.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr5A:-:219695038..219696755
Molecular Weight (calculated)
34126.2 Da
IEP (calculated)
5.870
GRAVY (calculated)
-0.600
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MCCGAEVADP GEHRRRLAAG DDDGGDGREE HALLSSPPPN TTMWRRRQAQ DMSAMVSALA HVVAGGVGDG GIASSTKRPA EHEAFAEEAW WSTSYGGGDG
101: DGGAPSAASP FLADYTAAPA ASYSPHGVAA GDEELPSPSS AESGGSGGTP RKRYRGVRQR PWGKWAAEIR DPHKAARVWL GTFDNAEAAA RAYDAAALGF
201: RGSRAKLNFP ESATIPPQQQ PPPAPALAMP PPQRPEALLE SQALLGGQAY SHYARFLLPS TGGSTSGAPR TPAPPVMYSF GAGASYPMQP ESRGEGASTE
301: RPGPVVTSAA AWAAYSHEQP ERRDDPSV
101: DGGAPSAASP FLADYTAAPA ASYSPHGVAA GDEELPSPSS AESGGSGGTP RKRYRGVRQR PWGKWAAEIR DPHKAARVWL GTFDNAEAAA RAYDAAALGF
201: RGSRAKLNFP ESATIPPQQQ PPPAPALAMP PPQRPEALLE SQALLGGQAY SHYARFLLPS TGGSTSGAPR TPAPPVMYSF GAGASYPMQP ESRGEGASTE
301: RPGPVVTSAA AWAAYSHEQP ERRDDPSV
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.