Factsheet for TraesCS4A01G005600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G298400.1	Wheat	nucleus	90.19	90.48
TraesCS4B01G299500.1	Wheat	nucleus	78.8	78.8
HORVU4Hr1G077310.2	Barley	nucleus	82.59	76.32
KXG40036	Sorghum	nucleus	58.54	55.22
Zm00001d027925_P001	Maize	nucleus	58.23	54.12
TraesCS5A01G314600.1	Wheat	nucleus	23.42	36.27
TraesCS7A01G158000.1	Wheat	nucleus	32.59	29.18
TraesCS6A01G343300.1	Wheat	nucleus	36.08	28.64
TraesCS7A01G377400.1	Wheat	nucleus	29.43	27.35
TraesCS1A01G231200.1	Wheat	nucleus	15.51	27.22
TraesCS6A01G097700.1	Wheat	nucleus	31.01	27.07
TraesCS5A01G215900.1	Wheat	nucleus	32.28	27.06
TraesCS6A01G097500.1	Wheat	nucleus	30.06	26.1
TraesCS6A01G319500.1	Wheat	nucleus	15.19	25.53
TraesCS7A01G264100.1	Wheat	plastid	18.04	25.11
TraesCS2A01G288000.1	Wheat	nucleus	18.67	23.51
TraesCS5A01G238400.1	Wheat	nucleus	16.77	21.99
TraesCS1A01G370600.1	Wheat	nucleus	17.72	21.88
Os03t0183000-02	Rice	plastid	23.1	21.86
TraesCS6A01G319600.1	Wheat	nucleus	16.77	21.46
TraesCS1A01G370400.1	Wheat	nucleus	17.09	20.77
TraesCS5A01G112600.1	Wheat	nucleus	20.57	19.82
TraesCS1A01G370700.1	Wheat	nucleus	16.14	19.25

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF63	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4A01G005600	EnsemblPlants:TraesCS4A01G005600.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4A:+:3370277..3371723

Molecular Weight (calculated)

33940.6 Da

IEP (calculated)

5.288

GRAVY (calculated)

-0.476

Length

316 amino acids

Sequence
(BLAST)

001: MCGGAILAEL IPPSAGRASK QVAAGRASPK KAGKSKGHRY GSVADVDDFE AAFENFDDDL DLQAEEDGDE HVVFASKPAF SPGLAYDDGR AAQAASKKKS
101: VRPLHGIRQR PWGKWAAEIR DPHKGTRVWL GTFDTADDAA RAYDVAARRL RGSKAKVNFP DAARAGARPR RASRRTAQKP QRPPARTTAY SATAAPRARP
201: EQDAMMVKPE RMEFSDVDAF VDLTAAVAVL PPVTASSFAD KMPRVDEDSS EGSGGGSMLG FADDLGFDPF MMLQYESMDS LFAGDAVIQD ARGVDGGMDG
301: VSLWSFEEFP MDSAIF

Best Arabidopsis Sequence Match ( AT1G72360.2 )
(BLAST)

001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASGSASDGKK KQSSRYKGIR RRPWGRWAAE IRDPIKGVRV
101: WLGTFNTAEE AARAYDLEAK RIRGAKAKLN FPNESSGKRK AKAKTVQQVE ENHEADLDVA VVSSAPSSSC LDFLWEENNP DTLLIDTQWL EDIIMGDANK
201: KHEPNDSEEA NNVDASLLSE ELLAFENQTE YFSQMPFTEG NCDSSTSLSS LFDGGNDMGL WS

Arabidopsis Description

HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.