Factsheet for Zm00001d027925_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG40036	Sorghum	nucleus	79.41	80.6
TraesCS4A01G005600.1	Wheat	nucleus, plastid	54.12	58.23
TraesCS4B01G299400.1	Wheat	nucleus	52.94	57.51
TraesCS4D01G298400.1	Wheat	nucleus	51.76	55.87
TraesCS4B01G299500.1	Wheat	nucleus	50.88	54.75
HORVU4Hr1G077310.2	Barley	nucleus	51.18	50.88
Zm00001d009103_P001	Maize	nucleus	24.12	35.65
Zm00001d040651_P001	Maize	nucleus	24.12	34.6
Zm00001d031673_P001	Maize	nucleus	17.35	30.41
Zm00001d052087_P001	Maize	nucleus	31.76	29.92
Zm00001d045044_P001	Maize	nucleus, plastid	29.71	27.82
Zm00001d037941_P001	Maize	nucleus	14.71	25.91
Zm00001d020595_P001	Maize	nucleus	30.88	25.12
Zm00001d007033_P001	Maize	plastid	20.59	24.65
Zm00001d018158_P001	Maize	nucleus	17.06	24.58
Zm00001d052167_P001	Maize	nucleus	16.47	24.35
Os03t0183000-02	Rice	plastid	23.82	24.25
Zm00001d005798_P001	Maize	nucleus	29.41	23.64
Zm00001d021089_P001	Maize	nucleus	15.0	22.47
Zm00001d005892_P001	Maize	nucleus	17.35	22.43
Zm00001d031796_P001	Maize	nucleus	16.76	21.19
Zm00001d016616_P001	Maize	nucleus	15.59	20.78
Zm00001d053195_P002	Maize	nucleus	18.82	19.45
Zm00001d018305_P001	Maize	nucleus	15.88	19.15
Zm00001d032095_P001	Maize	nucleus	19.71	17.63
Zm00001d047339_P001	Maize	plastid	22.65	17.07
Zm00001d023535_P001	Maize	nucleus	20.0	16.08
Zm00001d045386_P002	Maize	plastid	12.06	10.05

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	UniProt:B4FQB2	EMBL:BT039300
InterPro:DNA-bd_dom_sf	EMBL:EU970244	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	EMBL:KJ726938	ProteinID:ONL94300.1	PFAM:PF00847	PRINTS:PR00367
PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF63	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00017B7D79
EnsemblPlantsGene:Zm00001d027925	EnsemblPlants:Zm00001d027925_P001	EnsemblPlants:Zm00001d027925_T001	SEG:seg	:	:

Description

AP2-EREBP-transcription factor 180Ethylene-responsive transcription factor RAP2-3

Coordinates

chr1:-:17807124..17808643

Molecular Weight (calculated)

36891.2 Da

IEP (calculated)

4.907

GRAVY (calculated)

-0.732

Length

340 amino acids

Sequence
(BLAST)

001: MCGGAILAEL IPPTRRVASK PVTEGHLWSA SSKKAGSGRD KRHQHEYADD DFEAAFEDFD DDFDVHEDDE DGHFVFSSKS ALSPALHDGR AASQKKQRGR
101: QFRGIRQRPW GKWAAEIRDP HKGTRVWLGT FSTAEDAARA YDVEARRLRG SKAKVNFPAA SGRARGRARP RRGDDGNPRT APETQHPAQP ALLPRGERET
201: QRKEGIAAVK PEATESFDVG GGLFFDMAFP TFPASPPPQA VDTSFAGSTA TSETGSPAKR PRCDEDSSEG GSGSALELAD ELAFDPFVLL QMPYSGGYDD
301: DSLDGLFAAD EAVQQDVGNG MDGVRLWSFD EFPAVDGSVF

Best Arabidopsis Sequence Match ( AT1G53910.3 )
(BLAST)

001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEVF
101: GKKVTGLDGD AEKSANRKRK NQYRGIRQRP WGKWAAEIRD PREGARIWLG TFKTAEEAAR AYDAAARRIR GSKAKVNFPE ENMKANSQKR SVKANLQKPV
201: AKPNPNPSPA LVQNSNISFE NMCFMEEKHQ VSNNNNNQFG MTNSVDAGCN GYQYFSSDQG SNSFDCSEFG WSDQAPITPD ISSAVINNNN SALFFEEANP
301: AKKLKSMDFE TPYNNTEWDA SLDFLNEDAV TTQDNGANPM DLWSIDEIHS MIGGVF

Arabidopsis Description

RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.