Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G299500.1 | Wheat | nucleus | 79.23 | 78.48 |
| HORVU4Hr1G077310.2 | Barley | nucleus | 84.98 | 77.78 |
| KXG40036 | Sorghum | nucleus | 59.74 | 55.82 |
| Zm00001d027925_P001 | Maize | nucleus | 57.51 | 52.94 |
| TraesCS5B01G315500.2 | Wheat | nucleus | 23.32 | 34.76 |
| TraesCS6B01G126700.1 | Wheat | nucleus, plastid | 23.32 | 30.93 |
| TraesCS7B01G062200.1 | Wheat | nucleus | 31.95 | 28.17 |
| TraesCS6B01G375400.1 | Wheat | nucleus | 35.78 | 28.14 |
| TraesCS5B01G214400.1 | Wheat | nucleus | 33.23 | 26.94 |
| TraesCS1B01G243200.1 | Wheat | nucleus | 15.65 | 26.49 |
| TraesCS7B01G324400.1 | Wheat | nucleus | 26.2 | 26.28 |
| TraesCS7B01G283900.1 | Wheat | nucleus | 23.0 | 25.81 |
| TraesCS6B01G126600.1 | Wheat | nucleus | 30.03 | 25.68 |
| TraesCS6B01G350100.1 | Wheat | nucleus | 15.02 | 25.13 |
| TraesCS6B01G125900.1 | Wheat | nucleus | 30.35 | 24.68 |
| TraesCS7B01G162100.1 | Wheat | plastid | 17.25 | 24.11 |
| TraesCS6B01G350000.1 | Wheat | nucleus | 14.38 | 23.94 |
| TraesCS2B01G304800.1 | Wheat | nucleus | 18.85 | 23.32 |
| TraesCS5B01G236900.1 | Wheat | nucleus | 17.57 | 22.73 |
| TraesCS7B01G278700.1 | Wheat | nucleus | 27.8 | 22.72 |
| Os03t0183000-02 | Rice | plastid | 23.32 | 21.86 |
| TraesCS6B01G350400.1 | Wheat | nucleus | 17.57 | 21.74 |
| TraesCS1B01G389700.1 | Wheat | nucleus | 16.61 | 20.72 |
| TraesCS1B01G389800.1 | Wheat | nucleus | 16.93 | 20.46 |
| TraesCS1B01G389900.1 | Wheat | nucleus | 17.25 | 20.22 |
| TraesCS6B01G427100.1 | Wheat | nucleus | 20.45 | 19.34 |
| TraesCS5B01G118200.1 | Wheat | nucleus | 20.77 | 19.06 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.2 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF63 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS4B01G299400 | EnsemblPlants:TraesCS4B01G299400.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr4B:-:585821448..585823018
Molecular Weight (calculated)
33552.2 Da
IEP (calculated)
5.246
GRAVY (calculated)
-0.420
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAILAEL IPPSAAGRAP KQVAAGQASS KKGGMSKRHH SSIPDVDDFE AAFEDFDDDF DLQAEEDGGD HVVFASKPAF YPAYGGGRRA VQAASMKKRV
101: LHGIRQRPWG KWAAEIRDPH KGTRVWLGTF DTADDAARAY DVAARRLRGS KAKVNFPDAA RAGARPRRAS RRTAQKPPCP PAGTTAYSAT AASRAQPEQD
201: TMMAKPERME FSDVDTFVDL TAAVAALPPV TASSFADKMP RVDEDSSEGS GGGAMLGFAD ELGFEPFMMF QYESMDSLFA GHAVIQDARG VDGGMDGVSL
301: WSFDEFPMDS AIF
101: LHGIRQRPWG KWAAEIRDPH KGTRVWLGTF DTADDAARAY DVAARRLRGS KAKVNFPDAA RAGARPRRAS RRTAQKPPCP PAGTTAYSAT AASRAQPEQD
201: TMMAKPERME FSDVDTFVDL TAAVAALPPV TASSFADKMP RVDEDSSEGS GGGAMLGFAD ELGFEPFMMF QYESMDSLFA GHAVIQDARG VDGGMDGVSL
301: WSFDEFPMDS AIF
001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASASDGKKKQ SSRYKGIRRR PWGRWAAEIR DPIKGVRVWL
101: GTFNTAEEAA RAYDLEAKRI RGAKAKLNFP NESSGKRKAK AKTVQQVEEN HEADLDVAVV SSAPSSSCLD FLWEENNPDT LLIDTQWLED IIMGDANKKH
201: EPNDSEEANN VDASLLSEEL LAFENQTEYF SQMPFTEGNC DSSTSLSSLF DGGNDMGLWS
101: GTFNTAEEAA RAYDLEAKRI RGAKAKLNFP NESSGKRKAK AKTVQQVEEN HEADLDVAVV SSAPSSSCLD FLWEENNPDT LLIDTQWLED IIMGDANKKH
201: EPNDSEEANN VDASLLSEEL LAFENQTEYF SQMPFTEGNC DSSTSLSSLF DGGNDMGLWS
Arabidopsis Description
HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.