Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G299000.1 | Wheat | nucleus | 95.21 | 95.21 |
| TraesCS6B01G350100.1 | Wheat | nucleus | 94.15 | 94.65 |
| TraesCS6A01G319500.1 | Wheat | nucleus | 91.49 | 91.49 |
| TraesCS6D01G298700.1 | Wheat | nucleus | 87.77 | 88.24 |
| HORVU6Hr1G078520.1 | Barley | nucleus | 85.64 | 86.1 |
| TraesCS6B01G350400.1 | Wheat | nucleus | 72.87 | 54.15 |
| KXG31168 | Sorghum | nucleus | 58.51 | 44.18 |
| Os02t0764700-01 | Rice | nucleus | 56.38 | 43.8 |
| Zm00001d052167_P001 | Maize | nucleus | 50.53 | 41.3 |
| Zm00001d018158_P001 | Maize | nucleus | 51.06 | 40.68 |
| TraesCS5B01G236900.1 | Wheat | nucleus | 43.09 | 33.47 |
| TraesCS1B01G389700.1 | Wheat | nucleus | 43.09 | 32.27 |
| TraesCS1B01G389800.1 | Wheat | nucleus | 41.49 | 30.12 |
| TraesCS1B01G389900.1 | Wheat | nucleus | 42.55 | 29.96 |
| TraesCS7B01G162100.1 | Wheat | plastid | 28.19 | 23.66 |
| TraesCS1B01G243200.1 | Wheat | nucleus | 22.34 | 22.7 |
| TraesCS5B01G315500.2 | Wheat | nucleus | 22.87 | 20.48 |
| TraesCS2B01G304800.1 | Wheat | nucleus | 26.06 | 19.37 |
| TraesCS6B01G126700.1 | Wheat | nucleus, plastid | 23.94 | 19.07 |
| TraesCS5B01G118200.1 | Wheat | nucleus | 32.98 | 18.18 |
| TraesCS4B01G299500.1 | Wheat | nucleus | 25.0 | 14.87 |
| TraesCS4B01G299400.1 | Wheat | nucleus | 23.94 | 14.38 |
| TraesCS6B01G125900.1 | Wheat | nucleus | 26.06 | 12.73 |
| TraesCS7B01G062200.1 | Wheat | nucleus | 23.94 | 12.68 |
| TraesCS6B01G375400.1 | Wheat | nucleus | 26.6 | 12.56 |
| TraesCS7B01G283900.1 | Wheat | nucleus | 18.09 | 12.19 |
| TraesCS5B01G214400.1 | Wheat | nucleus | 25.0 | 12.18 |
| TraesCS6B01G126600.1 | Wheat | nucleus | 22.87 | 11.75 |
| TraesCS6B01G427100.1 | Wheat | nucleus | 19.68 | 11.18 |
| TraesCS7B01G278700.1 | Wheat | nucleus | 21.81 | 10.71 |
| TraesCS7B01G324400.1 | Wheat | nucleus | 17.02 | 10.26 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF80 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS6B01G350000 | EnsemblPlants:TraesCS6B01G350000.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr6B:+:615167075..615167641
Molecular Weight (calculated)
19695.2 Da
IEP (calculated)
9.152
GRAVY (calculated)
-0.077
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPRLERGCS GFQLPNSELE DSLFLRALIS VVNGDAVVPT LHLEPSSTPH FAAAVPACAS CGVDGCIGCM FAAAAAPAGS SSEGEGCSAA SFVKGGGVGK
101: ITRRRSRSKF RGVRQRSWGK WAAEIRDPHR AVRKWLGTYD TAVDAARAYD LAALEFRGHR ARLNFPAAPA SSSSLASVSD SSWAAAQL
101: ITRRRSRSKF RGVRQRSWGK WAAEIRDPHR AVRKWLGTYD TAVDAARAYD LAALEFRGHR ARLNFPAAPA SSSSLASVSD SSWAAAQL
001: MHSGKRPLSP ESMAGNREEK KELCCCSTLS ESDVSDFVSE LTGQPIPSSI DDQSSSLTLQ EKSNSRQRNY RGVRQRPWGK WAAEIRDPNK AARVWLGTFD
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
101: TAEEAALAYD KAAFEFRGHK AKLNFPEHIR VNPTQLYPSP ATSHDRIIVT PPSPPPPIAP DILLDQYGHF QSRSSDSSAN LSMNMLSSSS SSLNHQGLRP
201: NLEDGENVKN ISIHKRRK
Arabidopsis Description
Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IFX1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.