Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G343300.1 | Wheat | nucleus | 94.97 | 94.97 |
| TraesCS6D01G324200.1 | Wheat | nucleus | 94.22 | 94.22 |
| HORVU6Hr1G082880.1 | Barley | nucleus | 81.16 | 87.53 |
| TraesCS7B01G283900.1 | Wheat | nucleus | 55.03 | 78.49 |
| TraesCS6B01G126600.1 | Wheat | nucleus | 70.1 | 76.23 |
| TraesCS7B01G324400.1 | Wheat | nucleus | 54.52 | 69.55 |
| TraesCS7B01G278700.1 | Wheat | nucleus | 66.58 | 69.19 |
| TraesCS6B01G125900.1 | Wheat | nucleus | 66.83 | 69.09 |
| TraesCS6B01G126700.1 | Wheat | nucleus, plastid | 40.7 | 68.64 |
| EES07642 | Sorghum | nucleus | 59.55 | 64.4 |
| TraesCS6B01G427100.1 | Wheat | nucleus | 53.27 | 64.05 |
| Zm00001d052087_P001 | Maize | nucleus | 57.54 | 63.43 |
| Zm00001d018305_P001 | Maize | nucleus | 39.95 | 56.38 |
| TraesCS7B01G062200.1 | Wheat | nucleus | 48.49 | 54.37 |
| VIT_09s0002g00470.t01 | Wine grape | nucleus | 39.7 | 41.69 |
| KRG97290 | Soybean | nucleus | 30.9 | 41.14 |
| KRH69017 | Soybean | nucleus | 34.92 | 40.29 |
| TraesCS5B01G315500.2 | Wheat | nucleus | 21.11 | 40.0 |
| GSMUA_Achr2P07300_001 | Banana | nucleus | 32.41 | 39.09 |
| PGSC0003DMT400012547 | Potato | nucleus | 36.43 | 38.98 |
| Solyc06g063070.2.1 | Tomato | nucleus | 36.43 | 38.98 |
| TraesCS5B01G214400.1 | Wheat | nucleus | 36.43 | 37.56 |
| Solyc03g123500.2.1 | Tomato | nucleus | 36.43 | 37.56 |
| KRH06265 | Soybean | nucleus | 35.43 | 36.91 |
| KRH47694 | Soybean | nucleus | 35.68 | 36.22 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.92 | 36.1 |
| PGSC0003DMT400023609 | Potato | nucleus | 35.18 | 35.9 |
| TraesCS4B01G299400.1 | Wheat | nucleus | 28.14 | 35.78 |
| Solyc12g049560.1.1 | Tomato | nucleus | 33.67 | 34.72 |
| TraesCS4B01G299500.1 | Wheat | nucleus | 27.39 | 34.49 |
| PGSC0003DMT400074248 | Potato | nucleus | 33.42 | 34.28 |
| TraesCS1B01G243200.1 | Wheat | nucleus | 13.07 | 28.11 |
| TraesCS6B01G350100.1 | Wheat | nucleus | 12.81 | 27.27 |
| TraesCS6B01G350000.1 | Wheat | nucleus | 12.56 | 26.6 |
| TraesCS7B01G162100.1 | Wheat | plastid | 14.32 | 25.45 |
| TraesCS6B01G350400.1 | Wheat | nucleus | 15.83 | 24.9 |
| TraesCS1B01G389700.1 | Wheat | nucleus | 15.08 | 23.9 |
| TraesCS1B01G389800.1 | Wheat | nucleus | 15.33 | 23.55 |
| TraesCS1B01G389900.1 | Wheat | nucleus | 15.58 | 23.22 |
| TraesCS5B01G236900.1 | Wheat | nucleus | 13.82 | 22.73 |
| TraesCS2B01G304800.1 | Wheat | nucleus | 14.32 | 22.53 |
| TraesCS5B01G118200.1 | Wheat | nucleus | 14.57 | 17.01 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF44 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS6B01G375400 | EnsemblPlants:TraesCS6B01G375400.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr6B:-:649831224..649834547
Molecular Weight (calculated)
42987.2 Da
IEP (calculated)
4.480
GRAVY (calculated)
-0.475
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAILKGL KVPAPARKVT AAVLWPEKNK PKRADGGARH LAGLGRRGGL GLDDGEADFE ADFEEFEADS GDSDQELGRG GVAEKDGDDE VVETKPFAAV
101: KRSLSQDDLS TMTTAGFDGP AQRSAKRKRK NEFRGIRQRP WGKWAAEIRD PSKGVRVWLG TFNSAEEAAR AYDVEARRIR GKKAKVNFPE EPTVPQKRRA
201: CPAAPKVPKS SAAQEPTVIP AVNNLANPNA FVYPSADFAS KQPLVQPDNV PFVPAINSAA PVEAPVMNMY SDQGSNSFGC SDLGWEYDTK TPDISSIAPI
301: STIAEGAETA LLQSNTYNPA VIAEGAESAP VQTNTYNSVV PPVMENNAVD FEPWMRFLLD DGVDEPIDSL LNFDVPQDVV GNMDLWSFDD MPICGEIF
101: KRSLSQDDLS TMTTAGFDGP AQRSAKRKRK NEFRGIRQRP WGKWAAEIRD PSKGVRVWLG TFNSAEEAAR AYDVEARRIR GKKAKVNFPE EPTVPQKRRA
201: CPAAPKVPKS SAAQEPTVIP AVNNLANPNA FVYPSADFAS KQPLVQPDNV PFVPAINSAA PVEAPVMNMY SDQGSNSFGC SDLGWEYDTK TPDISSIAPI
301: STIAEGAETA LLQSNTYNPA VIAEGAESAP VQTNTYNSVV PPVMENNAVD FEPWMRFLLD DGVDEPIDSL LNFDVPQDVV GNMDLWSFDD MPICGEIF
001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
Arabidopsis Description
RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.