Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G375400.1 | Wheat | nucleus | 94.22 | 94.22 |
| TraesCS6A01G343300.1 | Wheat | nucleus | 93.97 | 93.97 |
| HORVU6Hr1G082880.1 | Barley | nucleus | 79.9 | 86.18 |
| TraesCS7D01G378200.1 | Wheat | nucleus | 54.52 | 77.78 |
| TraesCS6D01G085000.1 | Wheat | nucleus | 61.81 | 75.93 |
| TraesCS6D01G084200.1 | Wheat | nucleus | 72.11 | 75.73 |
| TraesCS7D01G373700.1 | Wheat | nucleus | 65.08 | 72.14 |
| TraesCS7D01G416300.1 | Wheat | nucleus | 59.55 | 71.6 |
| TraesCS6D01G084900.1 | Wheat | nucleus | 68.09 | 69.67 |
| EES07642 | Sorghum | nucleus | 58.79 | 63.59 |
| Zm00001d052087_P001 | Maize | nucleus | 57.04 | 62.88 |
| Zm00001d018305_P001 | Maize | nucleus | 39.7 | 56.03 |
| TraesCS7D01G158500.1 | Wheat | nucleus | 47.74 | 53.52 |
| TraesCS5D01G320800.1 | Wheat | nucleus | 21.61 | 43.43 |
| VIT_09s0002g00470.t01 | Wine grape | nucleus | 39.95 | 41.95 |
| KRG97290 | Soybean | nucleus | 30.65 | 40.8 |
| KRH69017 | Soybean | nucleus | 34.67 | 40.0 |
| GSMUA_Achr2P07300_001 | Banana | nucleus | 32.66 | 39.39 |
| PGSC0003DMT400012547 | Potato | nucleus | 36.43 | 38.98 |
| Solyc06g063070.2.1 | Tomato | nucleus | 36.18 | 38.71 |
| Solyc03g123500.2.1 | Tomato | nucleus | 36.43 | 37.56 |
| KRH06265 | Soybean | nucleus | 35.43 | 36.91 |
| TraesCS5D01G223700.1 | Wheat | nucleus | 34.92 | 36.48 |
| KRH47694 | Soybean | nucleus | 35.68 | 36.22 |
| PGSC0003DMT400023609 | Potato | nucleus | 34.92 | 35.64 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.17 | 35.29 |
| TraesCS4D01G298400.1 | Wheat | nucleus | 27.89 | 35.24 |
| Solyc12g049560.1.1 | Tomato | nucleus | 34.17 | 35.23 |
| PGSC0003DMT400074248 | Potato | nucleus | 33.92 | 34.79 |
| TraesCS1D01G230900.1 | Wheat | nucleus | 12.56 | 27.17 |
| TraesCS6D01G298700.1 | Wheat | nucleus | 12.56 | 26.74 |
| TraesCS6D01G299000.1 | Wheat | nucleus | 12.56 | 26.6 |
| TraesCS7D01G265000.1 | Wheat | plastid | 14.32 | 25.45 |
| TraesCS6D01G298800.1 | Wheat | nucleus | 13.07 | 23.64 |
| TraesCS1D01G376600.1 | Wheat | nucleus | 15.58 | 23.4 |
| TraesCS1D01G376700.1 | Wheat | nucleus | 15.58 | 23.31 |
| TraesCS5D01G245300.1 | Wheat | nucleus | 14.32 | 23.17 |
| TraesCS1D01G376800.1 | Wheat | nucleus | 15.33 | 22.85 |
| TraesCS2D01G286300.1 | Wheat | nucleus | 14.32 | 22.53 |
| TraesCS1D01G376500.1 | Wheat | nucleus | 14.82 | 21.77 |
| TraesCS6D01G299100.1 | Wheat | nucleus, plastid | 15.58 | 20.88 |
| TraesCS5D01G129400.1 | Wheat | nucleus | 14.82 | 18.04 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF44 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS6D01G324200 | EnsemblPlants:TraesCS6D01G324200.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:-:430844351..430847575
Molecular Weight (calculated)
43195.7 Da
IEP (calculated)
4.627
GRAVY (calculated)
-0.399
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MCGGAILKDL KVPAPTRKVT AAVLWPEKNK PKRADGVARR LAGLGRRGGL GLDDGDVDFE ADFEEFEADS GDSDVELGRA GVAGKDGHDV VVEIKPLFAV
101: KRSLSQDDLS TMTTAGFDGP AQRSAKRKRK NEFRGIRQRP WGKWAAEIRD PSKGVRVWLG TFNSAEEAAR AYDVEARRIR GKKAKVNFPE ELTVHQKRRA
201: CPAAPKVPKS SAAQEPTVIP AVNNLANPNA FVYPPADFAS KQPLVQPDNV PYVPAINSAA PVEAPVMNMY SDQGSNSFGC SDLGWEYDTK TPDISSIAPI
301: STIAEGTESA LLQSNTYNPA VIAEGAESAL VQSNTYNSVV PPVMENNAVD FEPWMRFLVD DGVDEPIDSL LNFDVPQDVV GNMDLWSFDD MPICGEIF
101: KRSLSQDDLS TMTTAGFDGP AQRSAKRKRK NEFRGIRQRP WGKWAAEIRD PSKGVRVWLG TFNSAEEAAR AYDVEARRIR GKKAKVNFPE ELTVHQKRRA
201: CPAAPKVPKS SAAQEPTVIP AVNNLANPNA FVYPPADFAS KQPLVQPDNV PYVPAINSAA PVEAPVMNMY SDQGSNSFGC SDLGWEYDTK TPDISSIAPI
301: STIAEGTESA LLQSNTYNPA VIAEGAESAL VQSNTYNSVV PPVMENNAVD FEPWMRFLVD DGVDEPIDSL LNFDVPQDVV GNMDLWSFDD MPICGEIF
001: MCGGAIISDF IPPPRSRRVT SEFIWPDLKK NLKGSKKSSK NRSNFFDFDA EFEADFQGFK DDSSIDCDDD FDVGDVFADV KPFVFTSTPK PAVSAAAEGS
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
101: VFGKKVTGLD GDAEKSANRK RKNQYRGIRQ RPWGKWAAEI RDPREGARIW LGTFKTAEEA ARAYDAAARR IRGSKAKVNF PEENMKANSQ KRSVKANLQK
201: PVAKPNPNPS PALVQNSNIS FENMCFMEEK HQVSNNNNNQ FGMTNSVDAG CNGYQYFSSD QGSNSFDCSE FGWSDQAPIT PDISSAVINN NNSALFFEEA
301: NPAKKLKSMD FETPYNNTEW DASLDFLNED AVTTQDNGAN PMDLWSIDEI HSMIGGVF
Arabidopsis Description
RAP2-12Ethylene-responsive transcription factor RAP2-12 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSA8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.