Factsheet for TraesCS4D01G298400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G005600.1	Wheat	nucleus, plastid	90.48	90.19
TraesCS4B01G299500.1	Wheat	nucleus	78.73	78.48
HORVU4Hr1G077310.2	Barley	nucleus	82.86	76.32
KXG40036	Sorghum	nucleus	57.46	54.03
Zm00001d027925_P001	Maize	nucleus	55.87	51.76
TraesCS5D01G320800.1	Wheat	nucleus	22.54	35.86
TraesCS7D01G158500.1	Wheat	nucleus	32.06	28.45
TraesCS6D01G324200.1	Wheat	nucleus	35.24	27.89
TraesCS7D01G416300.1	Wheat	nucleus	28.57	27.19
TraesCS5D01G223700.1	Wheat	nucleus	32.06	26.51
TraesCS6D01G084200.1	Wheat	nucleus	31.11	25.86
TraesCS1D01G230900.1	Wheat	nucleus	14.92	25.54
TraesCS6D01G299000.1	Wheat	nucleus	15.24	25.53
TraesCS6D01G085000.1	Wheat	nucleus	26.03	25.31
TraesCS7D01G378200.1	Wheat	nucleus	22.22	25.09
TraesCS7D01G265000.1	Wheat	plastid	17.78	25.0
TraesCS6D01G084900.1	Wheat	nucleus	30.48	24.68
TraesCS6D01G298700.1	Wheat	nucleus	14.6	24.6
TraesCS7D01G373700.1	Wheat	nucleus	27.62	24.23
TraesCS2D01G286300.1	Wheat	nucleus	18.1	22.53
Os03t0183000-02	Rice	plastid	22.86	21.56
TraesCS5D01G245300.1	Wheat	nucleus	16.83	21.54
TraesCS1D01G376600.1	Wheat	nucleus	17.46	20.75
TraesCS1D01G376700.1	Wheat	nucleus	16.83	19.92
TraesCS5D01G129400.1	Wheat	nucleus	20.32	19.57
TraesCS6D01G298800.1	Wheat	nucleus	13.65	19.55
TraesCS1D01G376800.1	Wheat	nucleus	15.87	18.73
TraesCS6D01G299100.1	Wheat	nucleus, plastid	17.46	18.52
TraesCS1D01G376500.1	Wheat	nucleus	15.56	18.08

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.2	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF63	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4D01G298400	EnsemblPlants:TraesCS4D01G298400.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4D:-:467635222..467636744

Molecular Weight (calculated)

33696.5 Da

IEP (calculated)

4.993

GRAVY (calculated)

-0.421

Length

315 amino acids

Sequence
(BLAST)

001: MCGGAILAEL IPPSAGRASK QVAAGRASPK KAGKSKGQKY GSVADVDDFE AAFENFDDDL DLQAEEDGDD HVVFASRPAF SPAYDGGRRA VPAASKKKSV
101: RPLHGIRQRP WGKWAAEIRD PHKGTRAWLG TFDTADDAAR AYDVAARRLR GSKAKVNFPD AARAGARPRR ASRRTAQKPP CPPARMTAYS ATAAARAQPE
201: QDSMMVKPEL MESLDMDALV DLTTAVTALP TVMASSFADK MPRVDEDSSE GSGGGAMLGF ADELGFDPFM MFPYESMDSL FAGDAVIQDA RGVDGGMDGV
301: SLWSFDEFPM DSAIF

Best Arabidopsis Sequence Match ( AT1G72360.3 )
(BLAST)

001: MCGGAVISDY IAPEKIARSS GKSSWRSNGV FDCSIYDFDG NFDELESDEP FVFSSTHKHH ASASDGKKKQ SSRYKGIRRR PWGRWAAEIR DPIKGVRVWL
101: GTFNTAEEAA RAYDLEAKRI RGAKAKLNFP NESSGKRKAK AKTVQQVEEN HEADLDVAVV SSAPSSSCLD FLWEENNPDT LLIDTQWLED IIMGDANKKH
201: EPNDSEEANN VDASLLSEEL LAFENQTEYF SQMPFTEGNC DSSTSLSSLF DGGNDMGLWS

Arabidopsis Description

HRE1Integrase-type DNA-binding superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDA7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.