Factsheet for PGSC0003DMT400010296

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010297	Potato	nucleus	75.37	76.88
Solyc02g090790.1.1	Tomato	nucleus	82.76	74.01
PGSC0003DMT400011537	Potato	mitochondrion, nucleus	62.56	67.91
Solyc02g090800.1.1	Tomato	nucleus	43.35	67.18
PGSC0003DMT400021312	Potato	nucleus, plastid	26.11	34.42
PGSC0003DMT400021311	Potato	nucleus	26.11	34.19
VIT_07s0031g00710.t01	Wine grape	nucleus	27.59	30.11
VIT_07s0031g00720.t01	Wine grape	nucleus	30.54	28.84
PGSC0003DMT400065732	Potato	nucleus	30.05	26.52
PGSC0003DMT400036934	Potato	nucleus	29.06	21.38
PGSC0003DMT400066343	Potato	nucleus	29.56	20.34
PGSC0003DMT400043311	Potato	nucleus	24.63	18.94
PGSC0003DMT400060659	Potato	nucleus	30.54	18.29
PGSC0003DMT400081322	Potato	nucleus	24.63	17.99
PGSC0003DMT400050718	Potato	nucleus	32.02	16.41
PGSC0003DMT400048407	Potato	nucleus	31.03	15.95
PGSC0003DMT400012547	Potato	nucleus	26.11	14.25
PGSC0003DMT400074248	Potato	nucleus	26.11	13.66
PGSC0003DMT400016306	Potato	nucleus	29.06	13.38
PGSC0003DMT400023609	Potato	nucleus	24.63	12.82

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:M0ZXT9
PFAM:PF00847	EnsemblPlantsGene:PGSC0003DMG400004024	PGSC:PGSC0003DMG400004024	EnsemblPlants:PGSC0003DMT400010296	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000296DC2C	SEG:seg

Description

AP2/ERF domain-containing transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400004024]

Coordinates

chr2:+:43898740..43899660

Molecular Weight (calculated)

22609.6 Da

IEP (calculated)

6.299

GRAVY (calculated)

-0.595

Length

203 amino acids

Sequence
(BLAST)

001: MVSALRHVVS GAGDGDGLVN GEAAQLLLEV QNASGGSATS ANLMPRRSID VQLEKGKKRR RRNTKKEFRG VRQRPWGKWA AEIRDPHKAQ RLWLGTFITA
101: EDAARAYDKK AIEFRGEKAK TNFPITEYAA AAVNDEINKL PTVVMEEERE LLVQVLHGVD VAVNGDQNYS SSSSSMQNGE DDDFWETLED DGLVKRITQA
201: MFF

Best Arabidopsis Sequence Match ( AT1G28370.2 )
(BLAST)

001: MMSSQTSSHN KLIKLPQRFF FLHKQFFLHK QILLFVVVMA PTVKTAAVKT NEGNGVRYRG VRKRPWGRYA AEIRDPFKKS RVWLGTFDTP EEAARAYDKR
101: AIEFRGAKAK TNFPCYNINA HCLSLTQSLS QSSTVESSFP NLNLGSDSVS SRFPFPKIQV KAGMMVFDER SESDSSSVVM DVVRYEGRRV VLDLDLNFPP
201: PPEN

Arabidopsis Description

ERF11ERF domain protein 11 [Source:TAIR;Acc:AT1G28370]
SUBAcon: [mitochondrion,plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.