Factsheet for Solyc04g012050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060659	Potato	nucleus	73.37	86.14
Solyc02g090800.1.1	Tomato	nucleus	12.81	38.93
Solyc04g051360.2.1	Tomato	nucleus	25.63	33.66
Solyc10g050970.1.1	Tomato	nucleus	16.58	29.6
Solyc02g090770.1.1	Tomato	nucleus	14.82	29.06
Solyc03g118190.2.1	Tomato	nucleus	17.59	28.69
Solyc02g090790.1.1	Tomato	nucleus	16.33	28.63
Solyc12g056590.1.1	Tomato	nucleus	21.61	27.74
Solyc12g042210.1.1	Tomato	nucleus	19.1	26.48
Solyc06g068830.1.1	Tomato	nucleus	18.34	25.26
Solyc04g071770.2.1	Tomato	nucleus	26.13	23.01
Solyc01g108240.2.1	Tomato	nucleus	16.58	22.37
Solyc01g065980.2.1	Tomato	nucleus	13.82	21.65
Solyc09g075420.2.1	Tomato	nucleus	13.57	20.77
Solyc06g063070.2.1	Tomato	nucleus	16.08	17.2
Solyc03g123500.2.1	Tomato	nucleus	15.83	16.32
Solyc12g049560.1.1	Tomato	nucleus	14.82	15.29

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	UniProt:K4BPQ7
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF41	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:Solyc04g012050.2	EnsemblPlants:Solyc04g012050.2.1	UniParc:UPI00027661FB	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:4376146..4378819

Molecular Weight (calculated)

44577.3 Da

IEP (calculated)

5.527

GRAVY (calculated)

-0.736

Length

398 amino acids

Sequence
(BLAST)

001: MCKFKVANYR KKGNYKAIIR DDEEEESGIN NNDNINVMFS GNINREEEMS MMVTALTRVI TGEDRILNQE NNNNNIIGSS SLNEFSGGVG EKRGREEQQY
101: FLSDIISSSK VGEDSSINRT IASNTPTTEA TFIYTTPTYD HNNNTNIIDC DQPRRRYRGV RQRPWGKWAA EIRDPYKAAR VWLGTFDTAE DAARAYDETA
201: LKFRGSKAKL NFPENVRLLP TSSMEKGSLT NTFPSNSVES NLEFLTKKKV LTSTFPAENN MVFSTERQFM TDTFPTEYVP VSSIISPNTS PNTLSTISFF
301: PNSNPIAHTQ LSNSNSDDIN TQYFLNGDFQ RGNSSLSLLN QSMFSTTFQY SSSSPSSSSS SRVPFVPSMY FSGSQPTSQS SENDFRATSS DSAHHPPK

Best Arabidopsis Sequence Match ( AT5G64750.1 )
(BLAST)

001: MCVLKVANQE DNVGKKAESI RDDDHRTLSE IDQWLYLFAA EDDHHRHSFP TQQPPPSSSS SSLISGFSRE MEMSAIVSAL THVVAGNVPQ HQQGGGEGSG
101: EGTSNSSSSS GQKRRREVEE GGAKAVKAAN TLTVDQYFSG GSSTSKVREA SSNMSGPGPT YEYTTTATAS SETSSFSGDQ PRRRYRGVRQ RPWGKWAAEI
201: RDPFKAARVW LGTFDNAESA ARAYDEAALR FRGNKAKLNF PENVKLVRPA STEAQPVHQT AAQRPTQSRN SGSTTTLLPI RPASNQSVHS QPLMQSYNLS
301: YSEMARQQQQ FQQHHQQSLD LYDQMSFPLR FGHTGGSMMQ STSSSSSHSR PLFSPAAVQP PPESASETGY LQDIQWPSDK TSNNYNNSPS S

Arabidopsis Description

ABR1Ethylene-responsive transcription factor ABR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGF8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.