Factsheet for Bra017656.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45310	Canola	nucleus	95.56	98.85
AT4G34410.1	Thale cress	nucleus	80.37	80.97
Bra034624.1-P	Field mustard	nucleus	49.63	79.29
Bra011529.1-P	Field mustard	nucleus	74.81	77.1
PGSC0003DMT400021311	Potato	nucleus	28.15	49.03
PGSC0003DMT400021312	Potato	nucleus, plastid	26.3	46.1
KRH50274	Soybean	nucleus	35.56	41.74
GSMUA_Achr7P18930_001	Banana	nucleus	21.48	41.73
Solyc10g050970.1.1	Tomato	nucleus	34.07	41.26
VIT_03s0063g00460.t01	Wine grape	nucleus	37.04	40.49
KRH71142	Soybean	nucleus	31.85	40.0
GSMUA_Achr3P06960_001	Banana	nucleus	34.44	39.57
GSMUA_Achr6P02310_001	Banana	nucleus	27.78	37.88
TraesCS5B01G236900.1	Wheat	nucleus	32.96	36.78
TraesCS1B01G389700.1	Wheat	nucleus	33.33	35.86
TraesCS5A01G238400.1	Wheat	nucleus	31.85	35.68
TraesCS5D01G245300.1	Wheat	nucleus	32.22	35.37
Solyc01g108240.2.1	Tomato	nucleus	38.52	35.25
TraesCS1B01G389800.1	Wheat	nucleus	33.7	35.14
PGSC0003DMT400066343	Potato	nucleus	38.15	34.92
TraesCS1D01G376800.1	Wheat	nucleus	34.44	34.83
TraesCS1A01G370600.1	Wheat	nucleus	32.96	34.77
TraesCS1A01G370700.1	Wheat	nucleus	34.07	34.72
TraesCS1B01G389900.1	Wheat	nucleus	34.07	34.46
TraesCS1D01G376600.1	Wheat	nucleus	33.33	33.96
Zm00001d031796_P001	Maize	nucleus	33.7	33.83
TraesCS1A01G370400.1	Wheat	nucleus	32.22	33.46
HORVU1Hr1G082310.1	Barley	nucleus	32.59	33.33
HORVU5Hr1G068450.1	Barley	nucleus	32.96	33.21
TraesCS1D01G376700.1	Wheat	nucleus	32.22	32.71
Os09t0457900-01	Rice	nucleus	32.96	32.48
Zm00001d005892_P001	Maize	nucleus	31.11	31.94
Os08t0474000-01	Rice	nucleus	25.56	31.51
OQU80635	Sorghum	nucleus	33.7	31.16
TraesCS1D01G376500.1	Wheat	nucleus	31.11	31.0
EER96855	Sorghum	mitochondrion, nucleus	33.33	30.61
Bra005480.1-P	Field mustard	nucleus	21.48	26.85
Bra021871.1-P	Field mustard	nucleus	21.11	26.39
Bra008835.1-P	Field mustard	nucleus	20.37	25.35
Bra021401.1-P	Field mustard	nucleus	19.63	24.88
Bra019622.1-P	Field mustard	nucleus	20.74	24.67
Bra006195.1-P	Field mustard	nucleus	22.59	23.64
Bra021200.1-P	Field mustard	nucleus	21.11	23.46
Bra022176.1-P	Field mustard	nucleus	20.37	22.73
Bra005932.1-P	Field mustard	nucleus	21.11	22.35
Bra009272.1-P	Field mustard	nucleus	20.74	22.13
Bra023404.1-P	Field mustard	nucleus	20.37	22.09
Bra029302.1-P	Field mustard	nucleus	20.74	22.05
Bra001640.1-P	Field mustard	nucleus	20.0	22.04
Bra028703.1-P	Field mustard	nucleus	20.74	21.96
Bra003883.1-P	Field mustard	nucleus	17.78	19.75
Bra031903.1-P	Field mustard	nucleus	25.93	18.47
Bra037794.1-P	Field mustard	nucleus	25.56	18.11
Bra016063.1-P	Field mustard	nucleus	16.3	17.53
Bra024325.1-P	Field mustard	nucleus	25.19	17.22
Bra001541.1-P	Field mustard	nucleus	18.89	14.49
Bra021543.1-P	Field mustard	nucleus	19.26	14.25
Bra030919.1-P	Field mustard	nucleus	15.93	14.05
Bra027355.1-P	Field mustard	nucleus	19.26	13.72

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra017656	EnsemblPlants:Bra017656.1
EnsemblPlants:Bra017656.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DMC3	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF62	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI0002541278	SEG:seg

Description

AT4G34410 (E=7e-078) RRTF1 | RRTF1 ({REDOX RESPONSIVE TRANSCRIPTION FACTOR 1); DNA binding / transcription factor

Coordinates

chrA03:+:29558814..29559626

Molecular Weight (calculated)

29682.3 Da

IEP (calculated)

6.771

GRAVY (calculated)

-0.724

Length

270 amino acids

Sequence
(BLAST)

001: MHYPNNTRPE FVGAPASERD STRNRYQQKE QLSPEQELSV IVSALQHVLS GEKETTPYQG FSSSSTVISA GMHSDTCQVC RIDGCLGCNY FFAPNQRIEK
101: KQQVEVEEGV TSKSSGREST VVAAAATGKI RKRKNKKNGY RGVRQRPWGK FAAEIRDPKR ATRVWLGPFE TAEDAARAYD RAAIGFRGPR AKLNFPFVDY
201: TSATTSSSVP AEDTRTNASA SVSAVDSVEA EQWRGGEGGD CDMEEYLKMV MDFGNGDSSD SGNTIADMFQ

Best Arabidopsis Sequence Match ( AT4G34410.1 )
(BLAST)

001: MHYPNNRTEF VGAPAPTRYQ KEQLSPEQEL SVIVSALQHV ISGENETAPC QGFSSDSTVI SAGMPRLDSD TCQVCRIEGC LGCNYFFAPN QRIEKNHQQE
101: EEITSSSNRR RESSPVAKKA EGGGKIRKRK NKKNGYRGVR QRPWGKFAAE IRDPKRATRV WLGTFETAED AARAYDRAAI GFRGPRAKLN FPFVDYTSSV
201: SSPVAADDIG AKASASASVS ATDSVEAEQW NGGGGDCNME EWMNMMMMMD FGNGDSSDSG NTIADMFQ

Arabidopsis Description

ERF109Ethylene-responsive transcription factor ERF109 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ06]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.