Factsheet for Bra021543.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39107	Canola	nucleus	99.18	92.82
CDY65334	Canola	nucleus	93.97	89.56
Bra027355.1-P	Field mustard	nucleus	81.64	78.63
AT3G14230.1	Thale cress	nucleus	81.1	78.1
Bra001541.1-P	Field mustard	nucleus	72.33	75.0
Bra030919.1-P	Field mustard	nucleus	53.42	63.73
TraesCS5D01G320800.1	Wheat	nucleus	24.38	44.95
TraesCS5A01G314600.1	Wheat	nucleus	24.38	43.63
TraesCS5B01G315500.2	Wheat	nucleus	24.66	42.86
Os01t0313300-01	Rice	nucleus	23.84	42.03
Bra021401.1-P	Field mustard	nucleus	23.01	39.44
EES00666	Sorghum	nucleus	24.11	38.77
Zm00001d009103_P001	Maize	nucleus	23.84	37.83
Zm00001d040651_P001	Maize	nucleus	24.38	37.55
Bra016063.1-P	Field mustard	nucleus	24.66	35.86
Bra003883.1-P	Field mustard	nucleus	23.84	35.8
Bra021200.1-P	Field mustard	nucleus	23.01	34.57
Bra022176.1-P	Field mustard	nucleus	22.47	33.88
Bra001640.1-P	Field mustard	nucleus	22.47	33.47
HORVU5Hr1G080790.1	Barley	nucleus	24.66	30.1
Bra034624.1-P	Field mustard	nucleus	13.15	28.4
Bra021871.1-P	Field mustard	nucleus	15.62	26.39
Bra005480.1-P	Field mustard	nucleus	15.62	26.39
Zm00001d007033_P001	Maize	plastid	18.9	24.3
Bra008835.1-P	Field mustard	nucleus	13.97	23.5
Bra019622.1-P	Field mustard	nucleus	14.52	23.35
Bra028703.1-P	Field mustard	nucleus	16.16	23.14
Bra009272.1-P	Field mustard	nucleus	15.89	22.92
Bra005932.1-P	Field mustard	nucleus	15.89	22.75
Bra006195.1-P	Field mustard	nucleus	15.62	22.09
Bra023404.1-P	Field mustard	nucleus	14.79	21.69
Bra029302.1-P	Field mustard	nucleus	15.07	21.65
Bra031903.1-P	Field mustard	nucleus	21.92	21.11
Bra011529.1-P	Field mustard	nucleus	14.52	20.23
Bra024325.1-P	Field mustard	nucleus	21.64	20.0
Bra037794.1-P	Field mustard	nucleus	20.55	19.68
Bra017656.1-P	Field mustard	nucleus	14.25	19.26

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	EnsemblPlantsGene:Bra021543	EnsemblPlants:Bra021543.1
EnsemblPlants:Bra021543.1-P	InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	UniProt:M4DYE7	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF66	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000254437D	SEG:seg

Description

AT3G14230 (E=4e-126) RAP2.2 | RAP2.2; DNA binding / transcription factor

Coordinates

chrA01:+:24660562..24662229

Molecular Weight (calculated)

40570.6 Da

IEP (calculated)

4.591

GRAVY (calculated)

-0.837

Length

365 amino acids

Sequence
(BLAST)

001: MCGGAIISDF IPPPSSRRVT SEFLWPDLKK NKGKASKKRS DFFDLDDEFE ADFQGFEDDD ASFDCEDDDE DDDVFAKVKP FVFTATTKPV ASPPTATGSV
101: SGKKIIESGG QAEKSAKRKR KNQYRGIRQR PWGKWAAEIR DPRKGSREWL GTFDTAEEAA RAYDAAARRI RGSKAKVNFP EESNNNRSVS QKRPSAKKLV
201: AKPNQSPALV QQPMSQYCNN SFGDVSFVEE KPQMYNNQFG LTNSYNNHYF GSDQGSNSFD CSEFGWSDHG PKTPEISSML VGNNQAPFTE ETNAAKKLKP
301: SSDDGTSNQS DDLMAYLDNA LWESPSPLEV EAMLGVDAVA VTQGEENPMD LWSLDDINYM LEGVF

Best Arabidopsis Sequence Match ( AT3G14230.3 )
(BLAST)

001: MCGGAIISDF IPPPRSLRVT NEFIWPDLKN KVKASKKRSN KRSDFFDLDD DFEADFQGFK DDSAFDCEDD DDVFVNVKPF VFTATTKPVA SAFVSTGSAY
101: AKKTVESAEQ AEKSSKRKRK NQYRGIRQRP WGKWAAEIRD PRKGSREWLG TFDTAEEAAR AYDAAARRIR GTKAKVNFPE EKNPSVVSQK RPSAKTNNLQ
201: KSVAKPNKSV TLVQQPTHLS QQYCNNSFDN SFGDMSFMEE KPQMYNNQFG LTNSFDAGGN NGYQYFSSDQ GSNSFDCSEF GWSDHGPKTP EISSMLVNNN
301: EASFVEETNA AKKLKPNSDE SDDLMAYLDN ALWDTPLEVE AMLGADAGAV TQEEENPVEL WSLDEINFML EGDF

Arabidopsis Description

RAP2-2Ethylene-responsive transcription factor RAP2-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUM4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.