Factsheet for Bra001815.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000943.1-P
Bra004035.1-P
Bra008669.1-P
Bra018081.1-P
Bra033769.1-P
Bra033925.1-P
Bra037384.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G21150.1	Bra004035.1-P	AT1G68520.1	21798944
AT3G21150.1	Bra033925.1-P	AT1G68520.1	21798944
AT3G21150.1	Bra018081.1-P	AT3G48150.1	21798944
AT3G21150.1	Bra033769.1-P	AT3G48150.1	21798944
AT3G21150.1	Bra000943.1-P	AT4G01090.1	21798944
AT3G21150.1	Bra037384.1-P	AT4G01090.1	21798944
AT3G21150.1	Bra008669.1-P	AT5G15840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82214	Canola	cytosol	100.0	100.0
Bra031255.1-P	Field mustard	cytosol	65.22	67.87
AT3G21150.1	Thale cress	cytosol	62.61	64.0
Bra039558.1-P	Field mustard	cytosol	12.17	28.87
GSMUA_Achr9P13880_001	Banana	nucleus	17.39	27.21
Bra023857.1-P	Field mustard	cytosol	13.04	24.39
VIT_09s0054g00530.t01	Wine grape	cytosol, nucleus, plastid	26.09	23.08
Bra019058.1-P	Field mustard	cytosol	19.13	21.46
Solyc06g063280.1.1	Tomato	nucleus	23.91	21.07
GSMUA_Achr6P03790_001	Banana	nucleus	20.43	20.98
Bra002986.1-P	Field mustard	cytosol	16.09	20.33
PGSC0003DMT400068177	Potato	nucleus	22.17	19.47
Bra022722.1-P	Field mustard	cytosol, nucleus, plastid	16.52	18.91
GSMUA_Achr1P10450_001	Banana	cytosol	19.57	18.83
GSMUA_Achr7P08700_001	Banana	cytosol	19.57	18.37
Bra026361.1-P	Field mustard	cytosol, nucleus, plastid	17.83	17.83
KRH47291	Soybean	nucleus	18.7	17.7
KRH44613	Soybean	nucleus	18.26	17.43
Bra010408.1-P	Field mustard	cytosol, nucleus, plastid	16.96	16.18
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus, plastid	19.13	14.92

Protein Annotations

EnsemblPlants:Bra001815.1	EnsemblPlants:Bra001815.1-P	EnsemblPlantsGene:Bra001815	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008270	InterPro:IPR000315	InterPro:Znf_B-box	PANTHER:PTHR31717
PANTHER:PTHR31717:SF22	SEG:seg	SMART:SM00336	UniParc:UPI0001D7DDCE	UniProt:M4CC85	MapMan:35.1

Description

AT3G21150 (E=2e-065) | zinc finger (B-box type) family protein

Coordinates

chrA03:-:18615240..18615932

Molecular Weight (calculated)

24621.5 Da

IEP (calculated)

8.452

GRAVY (calculated)

-0.070

Length

230 amino acids

Sequence
(BLAST)

001: MVKLCELCGA EAHLHCDADS AYLCRSCDVK FHASNFLFSR HVRRIICPGC SSLTGDIVSG SLSPWPAKIT CSCCGCGTSS SSASSCCSSL DLISTSELSS
101: STTRKTTVNR GPRRREKGVN AVGDGIFVNW CDELGLNGDS RNEVVSLASL ALAVGKTRGT KVILAAAFWF GVRNARKTMT CPRLKKVEDV TGVAAGMIRA
201: GESKLARAVT LQLRRCRMDS EEGWAENDNV

Best Arabidopsis Sequence Match ( AT3G21150.1 )
(BLAST)

001: MVSFCELCGA EADLHCAADS AFLCRSCDAK FHASNFLFAR HFRRVICPNC KSLTQNFVSG PLLPWPPRTT CCSESSSSSC CSSLDCVSSS ELSSTTRDVN
101: RARGRENRVN AKAVAVTVAD GIFVNWCGKL GLNRDLTNAV VSYASLALAV ETRPRATKRV FLAAAFWFGV KNTTTWQNLK KVEDVTGVSA GMIRAVESKL
201: ARAMTQQLRR WRVDSEEGWA ENDNV

Arabidopsis Description

BBX32B-box zinc finger protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJB7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.