Factsheet for Bra018081.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000304.1-P
Bra001497.1-P
Bra001585.1-P
Bra001592.1-P
Bra003510.1-P
Bra003900.1-P
Bra003902.1-P
Bra004515.1-P
Bra004677.1-P
Bra007701.1-P
Bra008000.1-P
Bra008305.1-P
Bra008613.1-P
Bra010501.1-P
Bra011558.1-P
Bra011662.1-P
Bra013534.1-P
Bra013838.1-P
Bra014221.1-P
Bra015169.1-P
Bra015512.1-P
Bra015670.1-P
Bra016094.1-P
Bra017091.1-P
Bra017747.1-P
Bra020695.1-P
Bra023570.1-P
Bra025616.1-P
Bra026151.1-P
Bra026775.1-P
Bra028905.1-P
Bra032414.1-P
Bra034691.1-P
Bra035062.1-P
Bra036167.1-P
Bra036240.1-P
Bra037247.1-P
Bra037483.1-P
Bra039264.1-P
Bra039384.1-P
Bra039652.1-P
Bra040872.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48150.1	Bra036240.1-P	AT1G03130.1	21798944
AT3G48150.1	Bra015512.1-P	AT1G06590.1	20706207
AT3G48150.1	Bra032414.1-P	AT1G06590.1	20706207
AT3G48150.1	Bra026151.1-P	AT1G15260.1	21798944
AT3G48150.1	Bra026775.1-P	AT1G15260.1	21798944
AT3G48150.1	Bra014221.1-P	AT1G49850.1	21798944
AT3G48150.1	Bra039652.1-P	AT1G49850.1	21798944
AT3G48150.1	Bra003902.1-P	AT1G71970.1	21798944
AT3G48150.1	Bra008000.1-P	AT1G71970.1	21798944
AT3G48150.1	Bra016094.1-P	AT1G71970.1	21798944
AT3G48150.1	Bra003900.1-P	AT1G72030.1	21798944
AT3G48150.1	Bra008305.1-P	AT1G77400.1	21798944
AT3G48150.1	Bra015670.1-P	AT1G77400.1	21798944
AT3G48150.1	Bra035062.1-P	AT1G78770.1	20706207
AT3G48150.1	Bra025616.1-P	AT2G04660.1	14508008
AT3G48150.1	Bra028905.1-P	AT2G04660.1	14508008
AT3G48150.1	Bra015169.1-P	AT2G05830.1	20706207
AT3G48150.1	Bra037247.1-P	AT2G17880.1	21798944
AT3G48150.1	Bra040872.1-P	AT2G17880.1	21798944
AT3G48150.1	Bra017091.1-P	AT2G39100.1	21798944
AT3G48150.1	Bra004677.1-P	AT2G42260.1	20706207
AT3G48150.1	Bra000304.1-P	AT2G43370.1	21798944
AT3G48150.1	Bra004515.1-P	AT2G46690.1	21798944
AT3G48150.1	Bra039264.1-P	AT2G46690.1	21798944
AT3G48150.1	Bra001497.1-P	AT3G13310.1	21798944
AT3G48150.1	Bra034691.1-P	AT3G13310.1	21798944
AT3G48150.1	Bra039384.1-P	AT3G13310.1	21798944
AT3G48150.1	Bra001585.1-P	AT3G15160.1	21798944
AT3G48150.1	Bra001592.1-P	AT3G15360.1	21798944
AT3G48150.1	Bra003510.1-P	AT3G62790.1	21798944
AT3G48150.1	Bra007701.1-P	AT3G62790.1	21798944
AT3G48150.1	Bra013534.1-P	AT4G21530.1	20706207
AT3G48150.1	Bra013838.1-P	AT4G24820.1	20706207
AT3G48150.1	Bra011558.1-P	AT4G34740.1	21798944
AT3G48150.1	Bra010501.1-P	AT4G36110.1	21798944
AT3G48150.1	Bra011662.1-P	AT4G36110.1	21798944
AT3G48150.1	Bra017747.1-P	AT4G36110.1	21798944
AT3G48150.1	Bra008613.1-P	AT5G16560.1	21798944
AT3G48150.1	Bra023570.1-P	AT5G16560.1	21798944
AT3G48150.1	Bra020695.1-P	AT5G48500.1	21798944
AT3G48150.1	Bra036167.1-P	AT5G48500.1	21798944
AT3G48150.1	Bra037483.1-P	AT5G48500.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36901	Canola	cytosol	82.73	95.61
CDY44976	Canola	cytosol	81.87	93.86
Bra033769.1-P	Field mustard	nucleus	91.88	92.04
AT3G48150.1	Thale cress	cytosol	90.5	90.5
VIT_07s0130g00490.t01	Wine grape	cytosol	78.07	78.34
VIT_07s0031g02330.t01	Wine grape	cytosol	76.86	77.12
PGSC0003DMT400063189	Potato	cytosol	72.37	77.02
Solyc03g113740.2.1	Tomato	cytosol, mitochondrion	75.99	76.39
KRH27971	Soybean	nucleus	74.61	74.87
KRH77487	Soybean	nucleus	73.4	73.53
KRH24006	Soybean	cytosol	73.4	72.16
EES07517	Sorghum	cytosol	66.49	64.17
GSMUA_Achr11P...	Banana	cytosol	66.67	63.91
Zm00001d017475_P002	Maize	cytosol	65.28	63.11
TraesCS6A01G251400.1	Wheat	cytosol	64.94	62.77
TraesCS6B01G273900.1	Wheat	cytosol	64.94	62.77
TraesCS6D01G233200.1	Wheat	cytosol	64.77	62.6
Os02t0656300-01	Rice	cytosol	64.42	62.48
HORVU0Hr1G027080.4	Barley	plastid	60.1	58.0
HORVU6Hr1G062870.1	Barley	cytosol, plastid	64.77	57.78
KRH29310	Soybean	cytosol	31.43	56.88
Os06t0679100-00	Rice	plastid	16.58	53.93
Bra039034.1-P	Field mustard	cytosol	17.44	13.59
Bra027173.1-P	Field mustard	cytosol	17.79	13.12

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.3.4.1.1.2.4	InterPro:APC8	EnsemblPlantsGene:Bra018081	EnsemblPlants:Bra018081.1	EnsemblPlants:Bra018081.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005680	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	GO:GO:0030071	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4DNJ4
PFAM:PF04049	PFAM:PF13176	PFAM:PF13181	PFAM:PF13414	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR12558	PANTHER:PTHR12558:SF10	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI000253F324	SEG:seg	:	:	:

Description

AT3G48150 (E=0.0) APC8, CDC23 | APC8 (ANAPHASE-PROMOTING COMPLEX SUBUNIT 8); binding

Coordinates

chrA06:+:10105619..10108096

Molecular Weight (calculated)

66940.8 Da

IEP (calculated)

6.575

GRAVY (calculated)

-0.437

Length

579 amino acids

Sequence
(BLAST)

001: MVSKESCRNE IRAAIGQLSE RCLHSAAKWA GEQLVGIEQD PSNFTPSNTR FQRGSSSIRR RFSTNESIST PQPSVGFSQA ATPLPEEDEV IDGDLYHLAK
101: SYFNCREYRR ASHVLRDQMS KKSVFLRCYS LYLAGEKRKE EEMIELEGSL GKSDAINREL VSLERELSAL KRTGAIDSFG LYLYGVVLKE KGNETLARAS
201: LVESVNSYPW NWNAWSELQS LCTSIEILNS LNLSNHWMKE FFLASAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEDLLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPCDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQIYMLE EAIKCYKRAV SCTDTEGIAL NQLAKLHQKL GRDEEAAVYF
501: EKDVERMDSE GLEGPNMLEA LVFLATHFKT HKKFEEAEVY CTRILDYSGP EKEKAKSLLR GIRMEKTGFP SMDMEHFPL

Best Arabidopsis Sequence Match ( AT3G48150.1 )
(BLAST)

001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI

Arabidopsis Description

APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.