Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- nucleus 2
- peroxisome 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra021502.1-P | |
| Bra021503.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G15260.1 | Bra021502.1-P | AT3G13720.1 | 21798944 |
| AT1G15260.1 | Bra021503.1-P | AT3G13720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026151.1-P | Field mustard | mitochondrion | 77.3 | 78.57 |
| CDY39626 | Canola | mitochondrion, nucleus, plastid | 76.22 | 77.05 |
| AT1G15260.1 | Thale cress | mitochondrion | 63.78 | 66.29 |
| KRH44358 | Soybean | mitochondrion | 24.32 | 26.95 |
| KRH09868 | Soybean | mitochondrion | 30.81 | 26.27 |
| KRH23447 | Soybean | mitochondrion | 30.27 | 25.93 |
| Bra027193.1-P | Field mustard | mitochondrion, plastid | 21.08 | 25.66 |
| PGSC0003DMT400042550 | Potato | mitochondrion | 24.86 | 25.27 |
| PGSC0003DMT400006511 | Potato | cytosol | 28.65 | 23.14 |
| PGSC0003DMT400089587 | Potato | cytosol | 28.65 | 23.14 |
| Solyc03g120790.1.1 | Tomato | nucleus | 28.65 | 23.14 |
| KRH47035 | Soybean | mitochondrion | 26.49 | 22.9 |
Protein Annotations
Description
AT1G15260 (E=2e-060) | unknown protein
Coordinates
chrA09:-:33638159..33638716
Molecular Weight (calculated)
21059.1 Da
IEP (calculated)
9.915
GRAVY (calculated)
-0.677
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MMKPTAKSIE RVGRFLRKSL GSIKSTICFG KHHTVPKNNN SPLLSPFSCS LHRSCPQDSQ TEETYSVFSS ESTAVAETRD ESLINKVQHK KKPKKKKVAE
101: PLEEAKRRGE TLAQKMKDFN MVDLRDVEHA SDVQEALRCY SSIRSPVYLD IVDNFFTDMY YEFSDPLTIT SSIKGSRRKA GSFRL
101: PLEEAKRRGE TLAQKMKDFN MVDLRDVEHA SDVQEALRCY SSIRSPVYLD IVDNFFTDMY YEFSDPLTIT SSIKGSRRKA GSFRL
001: MMKPTSKSIQ RVGRFLKKTL GSIKSTICSS DYKNLPNDTP LLSPYSCSRR CPEDSQTQTK ESYTVICCDT AVADTTHQKS LNNQHKKKPK KVAEPFEDAK
101: KRGDALAQKM KDLNMVDLRD VDHALDVREA LRCYSSIRSP VYLDIVDNFF TDMYYEFSDP RTSAKINGSR RKAGSFRL
101: KRGDALAQKM KDLNMVDLRD VDHALDVREA LRCYSSIRSP VYLDIVDNFF TDMYYEFSDP RTSAKINGSR RKAGSFRL
Arabidopsis Description
LOW protein: ATP-dependent RNA helicase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8VY60]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.