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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 3
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002620.1-P
Bra002925.1-P
Bra003923.1-P
Bra010452.1-P
Bra012353.1-P
Bra012661.1-P
Bra012908.1-P
Bra013908.1-P
Bra013910.1-P
Bra014069.1-P
Bra014355.1-P
Bra021502.1-P
Bra021503.1-P
Bra021674.1-P
Bra022817.1-P
Bra022985.1-P
Bra024556.1-P
Bra024951.1-P
Bra028142.1-P
Bra028632.1-P
Bra030537.1-P
Bra032216.1-P
Bra033412.1-P
Bra037983.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13720.1 Bra030537.1-P AT1G03600.1 21798944
AT3G13720.1 Bra033412.1-P AT1G03600.1 21798944
AT3G13720.1 Bra012353.1-P AT1G22990.1 21798944
AT3G13720.1 Bra024556.1-P AT1G22990.1 21798944
AT3G13720.1 Bra014069.1-P AT1G47260.1 21798944
AT3G13720.1 Bra032216.1-P AT1G47260.1 21798944
AT3G13720.1 Bra014355.1-P AT1G55190.1 21798944
AT3G13720.1 Bra037983.1-P AT1G55190.1 21798944
AT3G13720.1 Bra003923.1-P AT1G71480.1 21798944
AT3G13720.1 Bra021674.1-P AT2G30880.1 21798944
AT3G13720.1 Bra022817.1-P AT2G30880.1 21798944
AT3G13720.1 Bra022985.1-P AT2G34690.1 18845362
AT3G13720.1 Bra021502.1-P AT3G13720.1 21798944
AT3G13720.1 Bra021503.1-P AT3G13720.1 21798944
AT3G13720.1 Bra012908.1-P AT3G50110.1 21798944
AT3G13720.1 Bra012661.1-P AT4G17486.1 21798944
AT3G13720.1 Bra010452.1-P AT4G25660.1 21798944
AT3G13720.1 Bra013908.1-P AT4G25660.1 21798944
AT3G13720.1 Bra013910.1-P AT4G25660.1 21798944
AT3G13720.1 Bra010452.1-P AT4G25680.1 21798944
AT3G13720.1 Bra013908.1-P AT4G25680.1 21798944
AT3G13720.1 Bra013910.1-P AT4G25680.1 21798944
AT3G13720.1 Bra028632.1-P AT5G09450.1 21798944
AT3G13720.1 Bra028142.1-P AT5G37680.1 21798944
AT3G13720.1 Bra024951.1-P AT5G47310.1 21798944
AT3G13720.1 Bra002925.1-P AT5G55200.1 21798944
AT3G13720.1 Bra002620.1-P AT5G58750.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY51733 Canola plastid 97.66 97.66
Bra021503.1-P Field mustard plastid 57.48 59.13
AT3G13720.1 Thale cress cytosol, plasma membrane, plastid 46.26 52.66
Bra027406.1-P Field mustard plasma membrane 40.19 47.51
Bra021504.1-P Field mustard endoplasmic reticulum, peroxisome, plasma membrane 38.32 45.05
Solyc03g121460.1.1 Tomato plastid 36.45 42.86
PGSC0003DMT400006409 Potato plasma membrane 35.98 42.31
Bra014355.1-P Field mustard cytosol, plasma membrane, plastid 34.58 39.15
KRH23330 Soybean plastid 32.71 38.04
Bra037983.1-P Field mustard extracellular, plasma membrane 24.3 37.14
KRH10001 Soybean mitochondrion 31.78 36.96
KRH47141 Soybean plasma membrane 28.97 34.83
VIT_09s0002g02400.t01 Wine grape plastid 31.31 34.72
GSMUA_Achr7P09070_001 Banana plastid 29.91 34.04
KRH44167 Soybean plasma membrane 27.1 32.95
Bra025954.1-P Field mustard plasma membrane 26.64 30.98
Bra031001.1-P Field mustard plasma membrane 25.23 29.83
Zm00001d039455_P002 Maize extracellular, mitochondrion 26.64 29.53
TraesCS3B01G122600.1 Wheat plastid 25.7 28.95
TraesCS3D01G106500.1 Wheat plastid 25.7 28.95
TraesCS3A01G104300.1 Wheat plastid 25.7 28.8
EES00126 Sorghum plastid 25.7 28.65
Os05t0200280-01 Rice plasma membrane 24.3 26.94
Bra017037.1-P Field mustard plastid 10.75 26.74
TraesCS1D01G130300.1 Wheat plastid 23.36 26.18
TraesCS1A01G124100.1 Wheat plastid 23.36 26.18
TraesCS1B01G143000.1 Wheat plastid 23.36 26.04
Bra038009.1-P Field mustard cytosol, endoplasmic reticulum, plasma membrane 22.43 25.81
Bra011125.1-P Field mustard mitochondrion 21.03 25.71
Bra007796.1-P Field mustard plastid 10.28 25.58
Os01t0196500-01 Rice plastid 23.83 25.37
Bra018602.1-P Field mustard plastid 24.3 25.0
Bra002833.1-P Field mustard plastid 21.03 24.32
Bra007216.1-P Field mustard plastid 22.9 24.14
Bra009110.1-P Field mustard plastid 23.83 23.72
Bra030561.1-P Field mustard plasma membrane 19.63 23.6
HORVU1Hr1G028520.1 Barley plastid 22.9 22.69
Bra003228.1-P Field mustard plastid 21.96 22.27
Bra004965.1-P Field mustard plastid 21.96 22.07
Zm00001d037747_P001 Maize plastid 19.16 21.81
Bra000056.1-P Field mustard plastid 22.43 21.62
Bra005924.1-P Field mustard plastid 21.96 21.56
OQU77594 Sorghum plastid 19.63 21.43
HORVU3Hr1G018940.2 Barley plastid 24.77 20.78
Bra005112.1-P Field mustard plastid 14.49 18.45
Protein Annotations
EnsemblPlants:Bra021502.1EnsemblPlants:Bra021502.1-PEnsemblPlantsGene:Bra021502GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF2PFAM:PF03208SEG:segTMHMM:TMhelix
UniParc:UPI000254472FUniProt:M4DYA6MapMan:22.8.4.3.2:::
Description
AT3G13720 (E=8e-042) PRA1.F3, PRA8 | PRA8
Coordinates
chrA01:+:24917594..24918238
Molecular Weight (calculated)
24223.7 Da
IEP (calculated)
7.011
GRAVY (calculated)
0.425
Length
214 amino acids
Sequence
(BLAST)
001: MTNYGAIPTS SRASPSPPVV DVESLSSDNN QCTACAMPRR PWGVMFDLHS MGLPHGISDA SSRFKTNYNY FRTNYGIFFS INFLIAFFGS PIKHPVSLMA
101: FTLLVSIYIL LYYLQEDEEP IKLFCCQISD KMIRIVKTCL FLLTMALLVV TNSSYVIYGW PLVIVYVPIL IHTVVRKTED LFLGEEAATM TETYGSSLRL
201: HVMFVLFNLY LSFG
Best Arabidopsis Sequence Match ( AT3G13720.1 )
(BLAST)
001: MTNYGAIPTS SHASPLVDVE SLSRAKHRIK AGLATRRAWR VMFDFHSMGL PHGVSDAFTR IKTNLAYFRM NYAIVVLIVI FFSLIWHPTS LIVFTVLVVV
101: WIFLYFLRDE PIKLFRFQID DRTVLIVLSV LTVVLLLLTN ATFNIVGALV TGAVLVLIHS VVRKTEDLFL DEEAATTETS GLTSYPST
Arabidopsis Description
PRA1F3PRA1 family protein F3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIC6]
SUBAcon: [plasma membrane,plastid,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.