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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra014355.1-P
Bra037983.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G47310.1 Bra014355.1-P AT1G55190.1 21798944
AT5G47310.1 Bra037983.1-P AT1G55190.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY64684 Canola cytosol 100.0 100.0
CDX77757 Canola cytosol 98.77 98.77
AT5G47310.1 Thale cress cytosol 91.77 91.02
Bra012661.1-P Field mustard cytosol 63.79 72.43
PGSC0003DMT400067477 Potato cytosol 60.91 66.97
Solyc08g078220.2.1 Tomato cytosol 60.91 66.97
KRH28159 Soybean cytosol 61.73 66.96
KRH77327 Soybean cytosol 59.67 64.73
GSMUA_Achr4P30040_001 Banana mitochondrion 58.44 63.39
KRH04183 Soybean cytosol 57.61 62.78
KRH57475 Soybean cytosol 57.2 62.33
GSMUA_AchrUn_... Banana cytosol 54.73 61.86
Zm00001d026190_P001 Maize cytosol 51.44 60.1
EES11216 Sorghum cytosol 51.44 60.1
Zm00001d002758_P002 Maize cytosol 51.03 59.33
TraesCS6D01G225900.1 Wheat cytosol 49.79 59.02
TraesCS6A01G243700.2 Wheat cytosol 49.38 58.82
TraesCS6B01G280600.1 Wheat cytosol 48.97 58.05
Zm00001d017468_P001 Maize cytosol 49.79 57.89
EES07522 Sorghum cytosol 49.38 57.42
Os02t0655500-01 Rice cytosol 47.33 56.37
Os04t0548000-01 Rice cytosol 47.74 56.04
TraesCS2A01G416700.1 Wheat cytosol 46.5 54.07
TraesCS2B01G435700.2 Wheat cytosol 46.09 53.85
TraesCS2D01G413700.1 Wheat cytosol 46.5 53.05
TraesCS5A01G543200.2 Wheat cytosol, peroxisome, vacuole 50.21 52.59
TraesCS4B01G376300.2 Wheat vacuole 50.62 51.9
EER95706 Sorghum mitochondrion 49.79 51.71
HORVU0Hr1G009550.1 Barley cytosol, peroxisome, plasma membrane 51.03 51.67
Os03t0100900-01 Rice plastid 51.85 51.43
GSMUA_Achr1P00440_001 Banana mitochondrion 55.56 49.27
HORVU2Hr1G098080.1 Barley peroxisome 46.5 43.3
Bra009823.1-P Field mustard cytosol, mitochondrion 38.27 42.27
Bra020487.1-P Field mustard mitochondrion 37.45 42.13
Zm00001d027266_P001 Maize mitochondrion, plastid 49.79 40.74
Bra011312.1-P Field mustard nucleus 37.86 40.0
Bra035161.1-P Field mustard cytosol 37.45 39.91
Bra003580.1-P Field mustard cytosol 35.8 38.16
Bra032034.1-P Field mustard nucleus, plasma membrane 38.27 37.35
Bra014091.1-P Field mustard nucleus 41.56 35.94
GSMUA_Achr5P12520_001 Banana plastid 52.67 35.07
Bra032229.1-P Field mustard nucleus 39.51 34.41
Bra010452.1-P Field mustard cytosol 21.81 20.87
Bra013910.1-P Field mustard cytosol 21.4 20.72
Bra013908.1-P Field mustard cytosol 20.58 20.41
Bra007813.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole 36.63 16.24
Protein Annotations
EnsemblPlants:Bra024951.1EnsemblPlants:Bra024951.1-PEnsemblPlantsGene:Bra024951Gene3D:3.90.1720.30InterPro:PPPDE_domMEROPS:C97.A03
PANTHER:PTHR12378PANTHER:PTHR12378:SF35PFAM:PF05903SMART:SM01179UniParc:UPI000253FA98UniProt:M4E845
MapMan:19.4.1.7:::::
Description
AT5G47310 (E=1e-125) | unknown protein
Coordinates
chrA06:-:24362735..24363978
Molecular Weight (calculated)
27010.5 Da
IEP (calculated)
4.489
GRAVY (calculated)
-0.362
Length
243 amino acids
Sequence
(BLAST)
001: MRVLGLSSSL CSTDEKEVEE MVGDSSSLTP VYLNVYDLTP VNNYLYWFGL GIFHSGIEAH GFEYGYGAHE YSSSGVFEVE PRNCPGFIFR RSVLLGTTSM
101: SPSDFRSFME KLSRKYHGDT YHLIAKNCNH FTEEVCLQVT GKPIPGWINR MARVGSFCNC ILPESIQLST VGQPEALEFS DDNDGSEESV ASSLSDETDG
201: EGQDHHLITA PNSDIAYLQD RPVRLARELL QEPSDGSPML KRS
Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)
001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS
Arabidopsis Description
At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.