Factsheet for GSMUA_Achr5P12520_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr7P09070_001
GSMUA_Achr7P10650_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	GSMUA_Achr10P...	AT2G39760.1	21798944
AT4G17486.1	GSMUA_Achr7P10650_001	AT2G39760.1	21798944
AT4G17486.1	GSMUA_AchrUn_...	AT4G25660.1	21798944
AT4G17486.1	GSMUA_AchrUn_...	AT4G25680.1	21798944
AT5G47310.1	GSMUA_Achr7P09070_001	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	44.93	76.28
GSMUA_Achr4P30040_001	Banana	mitochondrion	45.75	74.55
GSMUA_Achr1P00440_001	Banana	mitochondrion	53.15	70.8
EES11216	Sorghum	cytosol	37.53	65.87
Zm00001d002758_P002	Maize	cytosol	36.44	63.64
Zm00001d026190_P001	Maize	cytosol	36.16	63.46
Os02t0655500-01	Rice	cytosol	35.34	63.24
TraesCS6A01G243700.2	Wheat	cytosol	34.25	61.27
TraesCS6D01G225900.1	Wheat	cytosol	34.25	60.98
EES07522	Sorghum	cytosol	34.79	60.77
PGSC0003DMT400067477	Potato	cytosol	36.71	60.63
TraesCS6B01G280600.1	Wheat	cytosol	33.97	60.49
Solyc08g078220.2.1	Tomato	cytosol	36.44	60.18
Zm00001d017468_P001	Maize	cytosol	34.25	59.81
Os04t0548000-01	Rice	cytosol	33.7	59.42
EER95706	Sorghum	mitochondrion	37.81	58.97
KRH28159	Soybean	cytosol	35.89	58.48
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	36.99	58.19
KRH04183	Soybean	cytosol	35.34	57.85
KRH77327	Soybean	cytosol	35.34	57.59
Os03t0100900-01	Rice	plastid	38.36	57.14
TraesCS2A01G416700.1	Wheat	cytosol	32.33	56.46
TraesCS2B01G435700.2	Wheat	cytosol	31.78	55.77
TraesCS2D01G413700.1	Wheat	cytosol	32.33	55.4
TraesCS4B01G376300.2	Wheat	vacuole	35.62	54.85
KRH57475	Soybean	cytosol	33.42	54.71
HORVU0Hr1G009550.1	Barley	cytosol, peroxisome, plasma membrane	35.89	54.58
CDX90471	Canola	cytosol	31.78	54.21
AT4G17486.1	Thale cress	cytosol	33.15	54.02
CDY09624	Canola	cytosol	31.78	53.95
Bra012661.1-P	Field mustard	cytosol	31.51	53.74
CDY27921	Canola	cytosol	32.33	53.15
CDX77757	Canola	cytosol	35.34	53.09
Bra024951.1-P	Field mustard	cytosol	35.07	52.67
CDY64684	Canola	cytosol	35.07	52.67
AT5G47310.1	Thale cress	cytosol	35.07	52.24
CDX76571	Canola	cytosol	32.33	52.21
GSMUA_Achr5P06500_001	Banana	cytosol, extracellular, peroxisome	29.59	50.23
GSMUA_Achr2P19400_001	Banana	plastid	28.22	47.47
GSMUA_Achr7P25980_001	Banana	mitochondrion	26.03	45.67
HORVU2Hr1G098080.1	Barley	peroxisome	32.6	45.59
Zm00001d027266_P001	Maize	mitochondrion, plastid	36.99	45.45
GSMUA_Achr4P14060_001	Banana	cytosol, plastid, vacuole	20.27	44.85
GSMUA_Achr4P07180_001	Banana	cytosol, nucleus, peroxisome	26.3	41.74
GSMUA_Achr3P04560_001	Banana	mitochondrion	24.93	40.09
GSMUA_Achr4P01900_001	Banana	mitochondrion	24.66	39.82
GSMUA_Achr1P22650_001	Banana	mitochondrion, nucleus, plasma membrane	26.3	37.21
GSMUA_Achr11P...	Banana	mitochondrion	24.93	28.71
GSMUA_Achr11P...	Banana	cytosol	16.44	24.29
GSMUA_Achr11P...	Banana	cytosol	13.42	24.02
GSMUA_AchrUn_...	Banana	cytosol	15.89	23.39
GSMUA_Achr8P12230_001	Banana	cytosol	15.62	23.17

Protein Annotations

EnsemblPlants:GSMUA_Achr5P12520_001	EnsemblPlants:GSMUA_Achr5T12520_001	EnsemblPlantsGene:GSMUA_Achr5G12520_001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF35	PFAM:PF05903	SEG:seg	SMART:SM01179	UniParc:UPI0002964F9A	UniProt:M0SXY1
MapMan:19.4.1.7	:	:	:	:	:

Description

UPF0326 protein At4g17486 [Source:GMGC_GENE;Acc:GSMUA_Achr5G12520_001]

Coordinates

chr5:-:8976709..8982836

Molecular Weight (calculated)

39367.3 Da

IEP (calculated)

9.494

GRAVY (calculated)

-0.522

Length

365 amino acids

Sequence
(BLAST)

001: MAAAGTPPST SSATTSSPTS RPLPRHPSCP RRSPSPDLPS PSPSPLRARS TGLMCRPRRT GATGGGTAGS GGGRGASSRR RSAIPTVGGP GSGSGPSTPP
101: WTPPGRTTAP PTGFAAARPS STSPTRRRRC GIRVPNVGLP SRINMLSGSP SEKGLRNGGR DGCGRTRLYL NVYDLTPINK YLYWFGLGVF HSGIEVHGQE
201: YGFGAHDYPS SGVFEVEPKS CPGFIFRRSV WLGTTDMSRS EFRILIEDLA GKYHGDTYNL IIKNCNHFTD EVCMHLTGKS IPGWVNRLAR LGSFFRCIIP
301: ENIRVSAVGQ LPTHPTCFED EFDSFSSSSI EDSDEEDADH HLVKRPNIEF VHSSDEPLRL ARDVM

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.