CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX84933
CDX88803
CDX89402
CDX89404
CDX92368
CDX93236
CDX93238
CDX94426
CDX94429
CDY03907
CDY07031
CDY07638
CDY09128
CDY15722
CDY27605
CDY35676
CDY49480
CDY61778
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	CDX84933	AT1G27300.1	21798944
AT4G17486.1	CDY03907	AT1G27300.1	21798944
AT4G17486.1	CDY15722	AT1G27300.1	21798944
AT4G17486.1	CDY27605	AT1G27300.1	21798944
AT4G17486.1	CDX93236	AT2G39760.1	21798944
AT4G17486.1	CDX93238	AT2G39760.1	21798944
AT4G17486.1	CDY07031	AT2G39760.1	21798944
AT4G17486.1	CDY07638	AT2G39760.1	21798944
AT4G17486.1	CDY61778	AT2G39760.1	21798944
AT4G17486.1	CDX89402	AT4G25660.1	21798944
AT4G17486.1	CDX89404	AT4G25660.1	21798944
AT4G17486.1	CDX94426	AT4G25660.1	21798944
AT4G17486.1	CDX94429	AT4G25660.1	21798944
AT4G17486.1	CDY49480	AT4G25660.1	21798944
AT4G17486.1	CDY66007	AT4G25660.1	21798944
AT4G17486.1	CDX89402	AT4G25680.1	21798944
AT4G17486.1	CDX89404	AT4G25680.1	21798944
AT4G17486.1	CDX94426	AT4G25680.1	21798944
AT4G17486.1	CDX94429	AT4G25680.1	21798944
AT4G17486.1	CDY49480	AT4G25680.1	21798944
AT4G17486.1	CDY66007	AT4G25680.1	21798944
AT4G17486.1	CDX70995	AT5G22290.1	21798944
AT4G17486.1	CDX88803	AT5G22290.1	21798944
AT4G17486.1	CDX92368	AT5G22290.1	21798944
AT4G17486.1	CDY09128	AT5G22290.1	21798944
AT4G17486.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012661.1-P	Field mustard	cytosol	97.66	97.66
CDY09624	Canola	cytosol	96.26	95.81
CDY27921	Canola	cytosol	85.98	82.88
AT4G17486.1	Thale cress	cytosol	86.45	82.59
CDX76571	Canola	cytosol	86.92	82.3
CDX77757	Canola	cytosol	73.83	65.02
CDY64684	Canola	cytosol	72.9	64.2
KRH28159	Soybean	cytosol	62.15	59.38
PGSC0003DMT400067477	Potato	cytosol	60.28	58.37
GSMUA_Achr4P30040_001	Banana	mitochondrion	60.75	58.04
Solyc08g078220.2.1	Tomato	cytosol	59.35	57.47
KRH04183	Soybean	cytosol	59.81	57.4
GSMUA_AchrUn_...	Banana	cytosol	57.48	57.21
KRH77327	Soybean	cytosol	59.81	57.14
KRH57475	Soybean	cytosol	58.88	56.5
EES11216	Sorghum	cytosol	52.8	54.33
Zm00001d026190_P001	Maize	cytosol	52.8	54.33
Zm00001d002758_P002	Maize	cytosol	52.8	54.07
TraesCS6A01G243700.2	Wheat	cytosol	50.93	53.43
TraesCS6B01G280600.1	Wheat	cytosol	50.93	53.17
TraesCS6D01G225900.1	Wheat	cytosol	50.47	52.68
Zm00001d017468_P001	Maize	cytosol	51.4	52.63
Os04t0548000-01	Rice	cytosol	50.0	51.69
EES07522	Sorghum	cytosol	50.47	51.67
Os02t0655500-01	Rice	cytosol	48.13	50.49
TraesCS2B01G435700.2	Wheat	cytosol	48.6	50.0
TraesCS2A01G416700.1	Wheat	cytosol	48.6	49.76
TraesCS2D01G413700.1	Wheat	cytosol	48.6	48.83
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	52.8	48.71
HORVU0Hr1G009550.1	Barley	cytosol, peroxisome, plasma membrane	53.74	47.92
TraesCS4B01G376300.2	Wheat	vacuole	52.8	47.68
Os03t0100900-01	Rice	plastid	54.21	47.35
EER95706	Sorghum	mitochondrion	51.4	47.01
GSMUA_Achr1P00440_001	Banana	mitochondrion	57.01	44.53
CDY65539	Canola	cytosol, mitochondrion	45.33	44.09
CDY65538	Canola	cytosol, mitochondrion	45.33	44.09
CDX88162	Canola	cytosol, mitochondrion	45.33	44.09
CDY07077	Canola	cytosol, mitochondrion	44.86	43.64
CDY05475	Canola	mitochondrion	43.46	43.06
CDY05376	Canola	cytosol, mitochondrion	42.52	42.13
HORVU2Hr1G098080.1	Barley	peroxisome	49.53	40.61
CDX75209	Canola	nucleus	43.46	40.43
CDX76766	Canola	nucleus	44.39	40.25
CDY39951	Canola	cytosol	42.52	39.91
CDY62507	Canola	nucleus, plasma membrane	44.39	39.42
CDY35370	Canola	nucleus, plasma membrane	44.86	39.02
CDX87334	Canola	cytosol	42.06	38.79
CDY10616	Canola	cytosol, nucleus, peroxisome	45.33	38.65
CDX67961	Canola	cytosol	41.12	38.6
CDX79359	Canola	cytosol	40.65	38.16
Zm00001d027266_P001	Maize	mitochondrion, plastid	50.93	36.7
CDY25677	Canola	nucleus	45.33	36.06
CDY17002	Canola	nucleus	47.2	35.94
CDY17812	Canola	nucleus	46.26	35.23
CDY23657	Canola	nucleus	45.33	34.64
GSMUA_Achr5P12520_001	Banana	plastid	54.21	31.78
CDX68806	Canola	nucleus	43.46	30.0
CDY49480	Canola	cytosol	23.83	20.16
CDX94426	Canola	cytosol	23.36	19.84
CDY66007	Canola	cytosol	23.36	19.68
CDX89402	Canola	cytosol	22.43	19.12
CDX94429	Canola	cytosol	21.03	18.37
CDX89404	Canola	cytosol	21.03	18.37
CDY56277	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	42.99	16.79

Protein Annotations

EnsemblPlants:CDX90471	EnsemblPlantsGene:GSBRNA2T00151086001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR12378	PANTHER:PTHR12378:SF35	PFAM:PF05903	ProteinID:CDX90471
ProteinID:CDX90471.1	SEG:seg	SMART:SM01179	UniParc:UPI0004EF3F71	MapMan:19.4.1.7	:

Description

BnaA03g43100D

Coordinates

chrLK031863:+:420438..422009

Molecular Weight (calculated)

24143.1 Da

IEP (calculated)

4.510

GRAVY (calculated)

-0.414

Length

214 amino acids

Sequence
(BLAST)

001: MWKLSEEKSG DVAGLTPVYL NVYDLTPVND YLYWFGIGIF HSGVEAHGME YCYGAHEYSS SGVYEVEPKN CPGFIFRRSL LLGTTTMSPS DFRSYMEKLS
101: SKYHGDTYHL IAKNCNHFTQ EVCLQLTGQP IPGWINRLAR LGSFCNCLLP ESIQLTAVSA PSERLEFSDE DESNSEASSV SDDDEEEGSE KHLINVADRD
201: VVYLQNKPVR LTRE

Best Arabidopsis Sequence Match ( AT4G17486.1 )
(BLAST)

001: MWVPTLSSSS CSSDERDESS GEAALTPVYL NVYDLTPVNN YLYWFGIGIF HSGIEAHNLE YCYGAHEYPT SGVYEVEPRN CPGFIFRRSV LLGTTSMSRS
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VGSFCNCLLP ESIQLTAVSA LPERLEFSDE DESNSEASSV SDEEGSEQHL
201: INVADREIVY LQNKPVRLTR EEIP

Arabidopsis Description

DeSI-like protein At4g17486 [Source:UniProtKB/Swiss-Prot;Acc:Q93VG8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.