CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRG97837
KRH08874
KRH10001
KRH22653
KRH23330
KRH26664
KRH31032
KRH31520
KRH35244
KRH38387
KRH44167
KRH47141
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	KRG97393	AT1G27300.1	21798944
AT4G17486.1	KRH31520	AT1G27300.1	21798944
AT4G17486.1	KRH76090	AT1G27300.1	21798944
AT4G17486.1	KRG97837	AT2G39760.1	21798944
AT4G17486.1	KRH31032	AT2G39760.1	21798944
AT4G17486.1	KRH08874	AT4G25660.1	21798944
AT4G17486.1	KRH35244	AT4G25660.1	21798944
AT4G17486.1	KRH38387	AT4G25660.1	21798944
AT4G17486.1	KRH08874	AT4G25680.1	21798944
AT4G17486.1	KRH35244	AT4G25680.1	21798944
AT4G17486.1	KRH38387	AT4G25680.1	21798944
AT4G17486.1	KRH22653	AT5G22290.1	21798944
AT4G17486.1	KRH26664	AT5G22290.1	21798944
AT5G47310.1	KRH10001	AT1G55190.1	21798944
AT5G47310.1	KRH23330	AT1G55190.1	21798944
AT5G47310.1	KRH44167	AT1G55190.1	21798944
AT5G47310.1	KRH47141	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28159	Soybean	cytosol	94.64	94.64
KRH04183	Soybean	cytosol	72.77	73.09
KRH57475	Soybean	cytosol	71.43	71.75
PGSC0003DMT400067477	Potato	cytosol	66.96	67.87
Solyc08g078220.2.1	Tomato	cytosol	66.07	66.97
GSMUA_AchrUn_...	Banana	cytosol	59.38	61.86
GSMUA_Achr4P30040_001	Banana	mitochondrion	61.61	61.61
AT4G17486.1	Thale cress	cytosol	60.71	60.71
EES11216	Sorghum	cytosol	56.25	60.58
Zm00001d002758_P002	Maize	cytosol	56.25	60.29
CDX90471	Canola	cytosol	57.14	59.81
CDX76571	Canola	cytosol	60.27	59.73
CDX77757	Canola	cytosol	64.73	59.67
Bra024951.1-P	Field mustard	cytosol	64.73	59.67
CDY64684	Canola	cytosol	64.73	59.67
Zm00001d026190_P001	Maize	cytosol	55.36	59.62
CDY27921	Canola	cytosol	58.93	59.46
Bra012661.1-P	Field mustard	cytosol	56.7	59.35
AT5G47310.1	Thale cress	cytosol	64.73	59.18
CDY09624	Canola	cytosol	56.7	59.07
EES07522	Sorghum	cytosol	54.46	58.37
Os04t0548000-01	Rice	cytosol	53.57	57.97
Zm00001d017468_P001	Maize	cytosol	53.57	57.42
TraesCS6A01G243700.2	Wheat	cytosol	52.23	57.35
TraesCS6B01G280600.1	Wheat	cytosol	52.23	57.07
TraesCS6D01G225900.1	Wheat	cytosol	52.23	57.07
Os02t0655500-01	Rice	cytosol	51.79	56.86
Os03t0100900-01	Rice	plastid	57.59	52.65
TraesCS2A01G416700.1	Wheat	cytosol	49.11	52.63
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	54.46	52.59
KRH03735	Soybean	nucleus	52.68	52.44
TraesCS2B01G435700.2	Wheat	cytosol	48.21	51.92
TraesCS2D01G413700.1	Wheat	cytosol	49.11	51.64
TraesCS4B01G376300.2	Wheat	vacuole	54.02	51.05
EER95706	Sorghum	mitochondrion	53.12	50.85
HORVU0Hr1G009550.1	Barley	cytosol, peroxisome, plasma membrane	53.12	49.58
GSMUA_Achr1P00440_001	Banana	mitochondrion	59.38	48.54
KRH54877	Soybean	cytosol, peroxisome	40.18	47.62
KRH63012	Soybean	nucleus	48.21	46.96
KRH05264	Soybean	cytosol, mitochondrion	43.75	45.37
KRH15787	Soybean	mitochondrion	42.86	44.65
KRH44526	Soybean	mitochondrion	40.18	41.47
Zm00001d027266_P001	Maize	mitochondrion, plastid	54.91	41.41
KRH38144	Soybean	mitochondrion	39.73	41.4
HORVU2Hr1G098080.1	Barley	peroxisome	48.21	41.38
KRH15239	Soybean	mitochondrion	45.98	41.04
KRH05795	Soybean	mitochondrion	45.98	41.04
KRH52364	Soybean	mitochondrion	40.18	40.18
KRH61696	Soybean	cytosol	38.84	40.09
KRH49521	Soybean	mitochondrion	44.2	39.44
KRH47381	Soybean	cytosol	38.39	39.27
KRG89196	Soybean	mitochondrion	43.75	39.04
GSMUA_Achr5P12520_001	Banana	plastid	57.59	35.34
KRH35244	Soybean	cytosol, peroxisome, plastid	27.68	25.83
KRH08874	Soybean	cytosol	26.79	24.49
KRH38387	Soybean	cytosol	26.79	24.19

Protein Annotations

EMBL:ACUP02000669	EMBL:BT094532	EnsemblPlants:KRH77327	EnsemblPlantsGene:GLYMA_01G207000	EntrezGene:100809235	Gene3D:3.90.1720.30
InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF35	PFAM:PF05903	ProteinID:KRH77327	ProteinID:KRH77327.1
SEG:seg	SMART:SM01179	UniParc:UPI0001B16246	UniProt:C6TAJ5	MapMan:19.4.1.7	:

Description

hypothetical protein

Coordinates

chr1:+:53903368..53907036

Molecular Weight (calculated)

25363.6 Da

IEP (calculated)

5.727

GRAVY (calculated)

-0.428

Length

224 amino acids

Sequence
(BLAST)

001: MRWFPLSTTS NSERERNREN TTRASVYLNV YDLTPINNYL YMLGLGIFHS GIQVHDIEYG FGAHEYPSSG VFEVEPRSCP GFIFRRSVLL GSTDMSNSEF
101: RYFIERLSAK YHGDTYHLIA KNCNHFTDEV CQHLTGSPIP GWVNRMARVG SFCNCLLPES LQVAAVRHLP ERVAFDDDDG SGSDGLSASI ESEEDEPNHH
201: FLTSPNGDVA FLKEKPVRLA REHL

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.