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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000147.1-P
Bra002403.1-P
Bra006619.1-P
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra017053.1-P
Bra020182.1-P
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17486.1 Bra030034.1-P AT1G27300.1 21798944
AT4G17486.1 Bra032817.1-P AT1G27300.1 21798944
AT4G17486.1 Bra000147.1-P AT2G39760.1 21798944
AT4G17486.1 Bra017053.1-P AT2G39760.1 21798944
AT4G17486.1 Bra010452.1-P AT4G25660.1 21798944
AT4G17486.1 Bra013908.1-P AT4G25660.1 21798944
AT4G17486.1 Bra013910.1-P AT4G25660.1 21798944
AT4G17486.1 Bra010452.1-P AT4G25680.1 21798944
AT4G17486.1 Bra013908.1-P AT4G25680.1 21798944
AT4G17486.1 Bra013910.1-P AT4G25680.1 21798944
AT4G17486.1 Bra002403.1-P AT5G22290.1 21798944
AT4G17486.1 Bra006619.1-P AT5G22290.1 21798944
AT4G17486.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX90471 Canola cytosol 97.66 97.66
AT4G17486.1 Thale cress cytosol 85.98 82.14
Bra024951.1-P Field mustard cytosol 72.43 63.79
KRH28159 Soybean cytosol 61.68 58.93
PGSC0003DMT400067477 Potato cytosol 59.81 57.92
GSMUA_Achr4P30040_001 Banana mitochondrion 59.81 57.14
Solyc08g078220.2.1 Tomato cytosol 58.88 57.01
KRH04183 Soybean cytosol 59.35 56.95
KRH57475 Soybean cytosol 59.35 56.95
KRH77327 Soybean cytosol 59.35 56.7
GSMUA_AchrUn_... Banana cytosol 56.54 56.28
Zm00001d026190_P001 Maize cytosol 52.34 53.85
EES11216 Sorghum cytosol 52.34 53.85
Zm00001d002758_P002 Maize cytosol 52.34 53.59
TraesCS6A01G243700.2 Wheat cytosol 50.47 52.94
TraesCS6B01G280600.1 Wheat cytosol 50.47 52.68
TraesCS6D01G225900.1 Wheat cytosol 50.0 52.2
Zm00001d017468_P001 Maize cytosol 50.93 52.15
Os04t0548000-01 Rice cytosol 49.53 51.21
EES07522 Sorghum cytosol 50.0 51.2
Os02t0655500-01 Rice cytosol 47.66 50.0
TraesCS2B01G435700.2 Wheat cytosol 48.13 49.52
TraesCS2A01G416700.1 Wheat cytosol 48.13 49.28
TraesCS2D01G413700.1 Wheat cytosol 48.13 48.36
TraesCS5A01G543200.2 Wheat cytosol, peroxisome, vacuole 52.34 48.28
TraesCS4B01G376300.2 Wheat vacuole 52.8 47.68
HORVU0Hr1G009550.1 Barley cytosol, peroxisome, plasma membrane 53.27 47.5
Os03t0100900-01 Rice plastid 54.21 47.35
EER95706 Sorghum mitochondrion 51.4 47.01
GSMUA_Achr1P00440_001 Banana mitochondrion 57.01 44.53
Bra009823.1-P Field mustard cytosol, mitochondrion 44.39 43.18
Bra020487.1-P Field mustard mitochondrion 42.99 42.59
HORVU2Hr1G098080.1 Barley peroxisome 49.07 40.23
Bra011312.1-P Field mustard nucleus 42.99 40.0
Bra035161.1-P Field mustard cytosol 41.59 39.04
Bra003580.1-P Field mustard cytosol 40.65 38.16
Bra032034.1-P Field mustard nucleus, plasma membrane 44.39 38.15
Zm00001d027266_P001 Maize mitochondrion, plastid 50.93 36.7
Bra014091.1-P Field mustard nucleus 45.79 34.88
Bra032229.1-P Field mustard nucleus 44.39 34.05
GSMUA_Achr5P12520_001 Banana plastid 53.74 31.51
Bra010452.1-P Field mustard cytosol 23.36 19.68
Bra013910.1-P Field mustard cytosol 22.43 19.12
Bra013908.1-P Field mustard cytosol 21.03 18.37
Bra007813.1-P Field mustard cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole 42.06 16.42
Protein Annotations
EnsemblPlants:Bra012661.1EnsemblPlants:Bra012661.1-PEnsemblPlantsGene:Bra012661Gene3D:3.90.1720.30InterPro:PPPDE_domPANTHER:PTHR12378
PANTHER:PTHR12378:SF35PFAM:PF05903SEG:segSMART:SM01179UniParc:UPI000254099DUniProt:M4D851
MapMan:19.4.1.7:::::
Description
AT4G17486 (E=2e-094) | unknown protein
Coordinates
chrA03:-:22873742..22874607
Molecular Weight (calculated)
24001.9 Da
IEP (calculated)
4.496
GRAVY (calculated)
-0.387
Length
214 amino acids
Sequence
(BLAST)
001: MWSSSEEKSG EVAGLTPVYL NVYDLTPVND YLYWFGIGIF HSGVEAHGME YCYGAHEYSS SGVYEVEPKN CPGFIFRRSL LLGTTTMSPS DFRSYMEKLS
101: SKFHGDTYHL IAKNCNHFTQ EVCLQLTGQP IPGWINRLAR LGSFCNCLLP ESIQLTAVSA PSERLEFSDG DESNSEASSV SDDDEEEGSE KHLINVADRD
201: VVYLQNKPVR LTRE
Best Arabidopsis Sequence Match ( AT4G17486.1 )
(BLAST)
001: MWVPTLSSSS CSSDERDESS GEAALTPVYL NVYDLTPVNN YLYWFGIGIF HSGIEAHNLE YCYGAHEYPT SGVYEVEPRN CPGFIFRRSV LLGTTSMSRS
101: DFRSYMEKLS RKYHGDTYHL IAKNCNHFTE EVCLQLTGKP IPGWINRLAR VGSFCNCLLP ESIQLTAVSA LPERLEFSDE DESNSEASSV SDEEGSEQHL
201: INVADREIVY LQNKPVRLTR EEIP
Arabidopsis Description
DeSI-like protein At4g17486 [Source:UniProtKB/Swiss-Prot;Acc:Q93VG8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.