Factsheet for Bra013910.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
plasma membrane 1
plastid 1
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000056.1-P
Bra000204.1-P
Bra000891.1-P
Bra000895.1-P
Bra002620.1-P
Bra003171.1-P
Bra003923.1-P
Bra005112.1-P
Bra005924.1-P
Bra006345.1-P
Bra007047.1-P
Bra008348.1-P
Bra008559.1-P
Bra008630.1-P
Bra009807.1-P
Bra009809.1-P
Bra010452.1-P
Bra011434.1-P
Bra012646.1-P
Bra012647.1-P
Bra013601.1-P
Bra013908.1-P
Bra013910.1-P
Bra014069.1-P
Bra014221.1-P
Bra014355.1-P
Bra015626.1-P
Bra016705.1-P
Bra019660.1-P
Bra020855.1-P
Bra021502.1-P
Bra021503.1-P
Bra021504.1-P
Bra021674.1-P
Bra021912.1-P
Bra022817.1-P
Bra023359.1-P
Bra023936.1-P
Bra024951.1-P
Bra027406.1-P
Bra027937.1-P
Bra028632.1-P
Bra032216.1-P
Bra035731.1-P
Bra036294.1-P
Bra036529.1-P
Bra037983.1-P
Bra038169.1-P
Bra039652.1-P
Bra040177.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G25660.1	Bra016705.1-P	AT1G14340.1	21798944
AT4G25660.1	Bra019660.1-P	AT1G14340.1	21798944
AT4G25660.1	Bra014069.1-P	AT1G47260.1	21798944
AT4G25660.1	Bra032216.1-P	AT1G47260.1	21798944
AT4G25660.1	Bra014221.1-P	AT1G49850.1	21798944
AT4G25660.1	Bra039652.1-P	AT1G49850.1	21798944
AT4G25660.1	Bra014355.1-P	AT1G55190.1	21798944
AT4G25660.1	Bra037983.1-P	AT1G55190.1	21798944
AT4G25660.1	Bra003923.1-P	AT1G71480.1	21798944
AT4G25660.1	Bra008348.1-P	AT1G78140.1	21798944
AT4G25660.1	Bra015626.1-P	AT1G78140.1	21798944
AT4G25660.1	Bra021674.1-P	AT2G30880.1	21798944
AT4G25660.1	Bra022817.1-P	AT2G30880.1	21798944
AT4G25660.1	Bra021912.1-P	AT2G34460.1	21798944
AT4G25660.1	Bra000056.1-P	AT2G38360.1	21798944
AT4G25660.1	Bra005112.1-P	AT2G38360.1	21798944
AT4G25660.1	Bra000204.1-P	AT2G40765.1	21798944
AT4G25660.1	Bra021504.1-P	AT3G13710.1	21798944
AT4G25660.1	Bra027406.1-P	AT3G13710.1	21798944
AT4G25660.1	Bra023936.1-P	AT3G20680.1	21798944
AT4G25660.1	Bra003171.1-P	AT3G54120.1	21798944
AT4G25660.1	Bra007047.1-P	AT3G54120.1	21798944
AT4G25660.1	Bra000895.1-P	AT4G02080.1	21798944
AT4G25660.1	Bra036294.1-P	AT4G02080.1	21798944
AT4G25660.1	Bra000891.1-P	AT4G02150.1	21798944
AT4G25660.1	Bra008559.1-P	AT4G02150.1	21798944
AT4G25660.1	Bra012646.1-P	AT4G17720.1	21798944
AT4G25660.1	Bra012647.1-P	AT4G17720.1	21798944
AT4G25660.1	Bra040177.1-P	AT4G17720.1	21798944
AT4G25660.1	Bra013601.1-P	AT4G22220.1	21798944
AT4G25660.1	Bra020855.1-P	AT4G22220.1	21798944
AT4G25660.1	Bra010452.1-P	AT4G25660.1	21798944
AT4G25660.1	Bra013908.1-P	AT4G25660.1	21798944
AT4G25660.1	Bra013910.1-P	AT4G25660.1	21798944
AT4G25660.1	Bra028632.1-P	AT5G09450.1	21798944
AT4G25660.1	Bra023359.1-P	AT5G12010.1	21798944
AT4G25660.1	Bra006345.1-P	AT5G16250.1	21798944
AT4G25660.1	Bra008630.1-P	AT5G16250.1	21798944
AT4G25660.1	Bra009807.1-P	AT5G24990.1	21798944
AT4G25660.1	Bra009809.1-P	AT5G24990.1	21798944
AT4G25660.1	Bra036529.1-P	AT5G24990.1	21798944
AT4G25660.1	Bra024951.1-P	AT5G47310.1	21798944
AT4G25660.1	Bra035731.1-P	AT5G51180.1	21798944
AT4G25660.1	Bra002620.1-P	AT5G58750.1	21798944
AT4G25680.1	Bra027937.1-P	AT1G56330.1	21798944
AT4G25680.1	Bra038169.1-P	AT1G56330.1	21798944
AT4G25680.1	Bra021674.1-P	AT2G30880.1	21798944
AT4G25680.1	Bra022817.1-P	AT2G30880.1	21798944
AT4G25680.1	Bra000056.1-P	AT2G38360.1	21798944
AT4G25680.1	Bra005112.1-P	AT2G38360.1	21798944
AT4G25680.1	Bra021504.1-P	AT3G13710.1	21798944
AT4G25680.1	Bra027406.1-P	AT3G13710.1	21798944
AT4G25680.1	Bra021502.1-P	AT3G13720.1	21798944
AT4G25680.1	Bra021503.1-P	AT3G13720.1	21798944
AT4G25680.1	Bra010452.1-P	AT4G25660.1	21798944
AT4G25680.1	Bra013908.1-P	AT4G25660.1	21798944
AT4G25680.1	Bra013910.1-P	AT4G25660.1	21798944
AT4G25680.1	Bra010452.1-P	AT4G25680.1	21798944
AT4G25680.1	Bra013908.1-P	AT4G25680.1	21798944
AT4G25680.1	Bra013910.1-P	AT4G25680.1	21798944
AT4G25680.1	Bra011434.1-P	AT4G33350.1	21798944
AT4G25680.1	Bra005924.1-P	AT5G07110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89402	Canola	cytosol	99.6	99.6
Bra010452.1-P	Field mustard	cytosol	88.45	87.4
AT4G25680.1	Thale cress	cytosol	86.06	85.71
AT4G25660.1	Thale cress	cytosol	84.46	83.14
Bra013908.1-P	Field mustard	cytosol	78.49	80.41
KRH08874	Soybean	cytosol	68.53	70.2
VIT_16s0050g01050.t01	Wine grape	cytosol	67.33	69.55
KRH38387	Soybean	cytosol	67.73	68.55
GSMUA_AchrUn_...	Banana	cytosol	59.36	60.08
KRH35244	Soybean	cytosol, peroxisome, plastid	50.2	52.5
Zm00001d045580_P001	Maize	cytosol	55.78	52.24
EER87703	Sorghum	cytosol	55.38	51.87
Os06t0107000-01	Rice	cytosol, nucleus	52.99	49.26
HORVU7Hr1G002080.2	Barley	cytosol	37.85	48.22
TraesCS7A01G019000.1	Wheat	cytosol	54.98	46.94
PGSC0003DMT400018924	Potato	cytosol	39.04	46.23
TraesCSU01G065800.1	Wheat	cytosol	54.18	45.95
Solyc02g082060.1.1	Tomato	cytosol	37.85	44.6
TraesCS7D01G016100.1	Wheat	nucleus	54.58	42.15
Bra035161.1-P	Field mustard	cytosol	23.9	26.32
Bra020487.1-P	Field mustard	mitochondrion	21.91	25.46
Bra009823.1-P	Field mustard	cytosol, mitochondrion	22.31	25.45
Bra011312.1-P	Field mustard	nucleus	22.71	24.78
Bra003580.1-P	Field mustard	cytosol	21.91	24.12
Bra012661.1-P	Field mustard	cytosol	19.12	22.43
Bra032034.1-P	Field mustard	nucleus, plasma membrane	21.91	22.09
Bra024951.1-P	Field mustard	cytosol	20.72	21.4
Bra014091.1-P	Field mustard	nucleus	21.51	19.22
Bra032229.1-P	Field mustard	nucleus	19.92	17.92
Bra007813.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, peroxisome, plasma membrane, vacuole	22.31	10.22

Protein Annotations

EnsemblPlants:Bra013910.1	EnsemblPlants:Bra013910.1-P	EnsemblPlantsGene:Bra013910	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF9	PFAM:PF05903	SEG:seg	SMART:SM01179	UniParc:UPI0002546A0D	UniProt:M4DBQ0
MapMan:19.4.1.7	:	:	:	:	:

Description

AT4G25680 (E=3e-117) | unknown protein

Coordinates

chrA01:+:8402704..8403953

Molecular Weight (calculated)

27839.7 Da

IEP (calculated)

7.850

GRAVY (calculated)

-0.482

Length

251 amino acids

Sequence
(BLAST)

001: MTEVVLHIYD VINSGSEKTN NTILQINRFF KDGIRLGGIF HSAIQVYGDE EWSYGFCEQG TGVFSCPSSK NPMYTYREKI VLGKTECTIF MVNQILRELS
101: REWPGHSYDL LSKNCNHFCD VLCDVLGVPK LPGWVNRFAH AGDTALEVAG NTAMRIKQAK TEIVSASKVA YRFLSNVTSN VTNGSNGSQQ RPGTLTSSDN
201: GNSRLQGSWF KGLLNTSKPS TSTEIDNKDE DANQQRKQSR DSAPLHHSAF G

Best Arabidopsis Sequence Match ( AT4G25680.1 )
(BLAST)

001: MTEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCELG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQMLRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAN AGDTALEVAG NTAMRMKQAK TELVSASKVA YRFLSNVTSN VTNGSNGSPQ RPGTLNNSDS
201: GNLRLQGSWL KGLLNTAKPS TSTEIGNKDE DANHAVTNQK KQSRDSDVLL FQ

Arabidopsis Description

At4g25680 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.