Factsheet for Bra023936.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G20680.1	Bra010452.1-P	AT4G25680.1	21798944
AT3G20680.1	Bra013908.1-P	AT4G25680.1	21798944
AT3G20680.1	Bra013910.1-P	AT4G25680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53616	Canola	plastid	97.93	97.93
AT3G20680.1	Thale cress	plastid	79.88	79.88
PGSC0003DMT400041419	Potato	cytosol	22.78	61.6
VIT_19s0014g05110.t01	Wine grape	plastid	55.62	55.46
KRH22230	Soybean	plastid	54.44	54.28
Solyc12g005240.1.1	Tomato	plastid	50.3	52.96
KRH27109	Soybean	plastid	54.14	52.89
PGSC0003DMT400056133	Potato	plastid	49.11	51.08
GSMUA_Achr6P00560_001	Banana	plastid	48.22	48.08
EES19766	Sorghum	plastid	42.6	40.79
Os05t0500400-01	Rice	plastid	40.24	40.0
TraesCS1B01G331700.1	Wheat	plastid	40.24	39.88
TraesCS1A01G319400.1	Wheat	plastid	39.94	39.47
TraesCS1D01G319200.1	Wheat	plastid	39.65	39.18
HORVU1Hr1G066510.7	Barley	mitochondrion	40.83	38.98
Zm00001d038606_P001	Maize	plastid	39.35	38.66

Protein Annotations

EnsemblPlants:Bra023936.1	EnsemblPlants:Bra023936.1-P	EnsemblPlantsGene:Bra023936	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:DUF1995	PANTHER:PTHR36365	PFAM:PF09353
SEG:seg	UniParc:UPI00025448EF	UniProt:M4E582	MapMan:35.2	:	:

Description

AT3G20680 (E=2e-117) | unknown protein

Coordinates

chrA01:+:21162082..21163098

Molecular Weight (calculated)

37591.2 Da

IEP (calculated)

10.089

GRAVY (calculated)

-0.271

Length

338 amino acids

Sequence
(BLAST)

001: MASSTLFKFH SQTFKTPNPS PPSSNHPTSR ISHLHFPTSL SRHSPRLNKE STTRTRFLAP FCSSLPSPSS TPASKEEAIL QAKTCLSSCL LKPLNNPKLA
101: SPKLKKLKQP RFRLEIPILD DDSPSSLSQL AFSIFSDMPI SRRGSNSVKL LFLWPDPSFV EPAVKAFRSD NTNHIAMSPV SEPLNRALKS ADVAVFMAPE
201: RSQLEDVRLS TEGFATKPVV MINPRWLFEE EKSFGDDFVG SFDVVYAFTG LEVRGILSKR KGVIFKCVRD GVVSGERWNV LVEEEEGDGA LRVVSQFKAR
301: PSMEEVELVL YNLMAMNSPI TKSAKFLKDL VSNITGKK

Best Arabidopsis Sequence Match ( AT3G20680.1 )
(BLAST)

001: MASSTLFKLN SQTFKALNPS PPSLSPPNSR IFHLHFSKSL SQQHSKLNHK STTTRLFAPL CSSLPSPSSS SPPLSKEEAI NQAKTCLLSC LIKPLNNPKL
101: ASPKLRKLKQ PRFRLEIPIL DDDSPSSLSQ LAFSIFHDLP ISRRGSNVKL LFLWPNPSFI DPAVKAFRSD SIHHIAMSPV SDSLKTALRS ADVAIFMAPE
201: KSQLEDVKTA SEAFSTKPVV MINPRWLFEE EKSFGDGFIG SFEVIYAFTG LEVRGVFSKR KGVIFKCVRD GVVSGERWNV LVEEEEGNGT LKVVSQFNSR
301: PSIEEVELVL YNLMAMNSPI TKSAKFLSDL VSNITGKK

Arabidopsis Description

AT3g20680/F3H11_7 [Source:UniProtKB/TrEMBL;Acc:Q9LHQ4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.